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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGGAGCAAAGGAGACCTCTGAGTCACAGAAAGAAGAGTACATTCATGTCCGGGCTCGGCGTGGCCAGGCAACCAACAGCCACAGCTTAGCAGAAAGGgtacatatttcagtgttctagtatggacagtatgctttgcaattggcatcagtacgttgaaactgagtattttacgtttcgtgtgcag

Basic information

species Oryza sativa
transcript LOC_Os09g29830.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g29830.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G137541_T01 (Zea mays), 5'ss of exon 2
GAAGGGAGCAAAGGAGACCTCTGAGTCACAGAAAGAAGAGTACATTCATGTCCGGGCTCGGCGTGGCCAGGCAACCAACAGCCACAGCTTAGCAGAAAGGgtacatattt-------cagtgttctagtatggacagtat-gctttgcaattggcatcagta-cgttgaaa---ctgagtatt---ttacgtttcgtgtgcag
||||||||  || |||  | | ||||| ||||| || || ||||| ||| |||| || || || || |||||||| |||||||||||| |||||||| ||||||  ||||       ||  ||| |        | | || ||| || || || ||| |       |||||   |||  | ||   || | | |    |||||
GAAGGGAGAGAAAGAGGTCCCCGAGTCTCAGAAGGAGGACTACATCCATATCCGAGCCCGCCGCGGACAGGCAACGAACAGCCACAGCCTAGCAGAACGGgtacggatttggtcacccaacgttttgccgcttgctggatcgctctgaaactgacatgaccggtcctgaaaaccctggctgttgcattgcatcttccctgcag

upper sequence: LOC_Os09g29830.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G818643_T02 (Zea mays), 5'ss of exon 2
GAAGGGAGCAAAGGAGACCTCTGAGTCACAGAAAGAAGAGTACATTCATGTCCGGGCTCGGCGTGGCCAGGCAACCAACAGCCACAGCTTAGCAGAAAGGgtacatatttca----------gtgttctagtatggacagtatgctttgcaattggcatcagtacgttgaaactgagtattttacgtttcgtg-tgcag----------------
 ||||| || |  |||||||| ||||| ||||| ||||| |||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||  |||| |          |  | |  || |  || || |||| ||  || |   || | |  |   | |  | | ||| ||  | | || |||                  
AAAGGGGGCGAGAGAGACCTCCGAGTCCCAGAAGGAAGACTACATTCATGTCCGAGCTCGGCGCGGACAGGCAACCAACAGCCACAGCCTAGCAGAAAGGgtacggatttgatcaacgggtggcatccccgtgtttaccgtctgctgtg-gatcgcggtctggaattcacaccccaatgtttaaccctgcttgctgcgtctttttttctctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218493872|gb|FG957202.1|FG957202
EST:     TCCGGGCTCGGCGTGGCCAGGCAACCAACAGCCACAGCTTAGCAGAAAGG                         TTGAGAAGGGAGAAGATCAGTGAGAGGATGAAACTTCTTCAGGACCTAGTT
genomic: TCCGGGCTCGGCGTGGCCAGGCAACCAACAGCCACAGCTTAGCAGAAAGGgtacatattt ... tcgtgtgcagTTGAGAAGGGAGAAGATCAGTGAGAGGATGAAACTTCTTCAGGACCTAGTT