Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAAGCCGCTTCATTAGTTCAAAATGAAAATAAAAAGTTTCATGGAGATCTTAAAGTTCCAAGTGCTATGTTTATTAAATGTGATGTTACTAATGCAGgtaagagtcttgataaggacaattaatttgtttgtgtacctcgttttcgagatcacacttgtagctgttttcctggtgctaaatgctttgataacaatca...

Basic information

species Oryza sativa
transcript LOC_Os09g28570.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g28570.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G147191_T02 (Zea mays), 5'ss of exon 2
AGAGAAGCCGCTTCATTAGTTCAAAATGAAAATAAAAAGTTTCATGGAGATCTTAAAGTTCCAAGTGCTATGTTTATTAAATGTGATGTTACTAATGCAGgtaagagtcttgat------aaggacaattaatttgtttgtgtacctcgttttcgagatcacacttgtagctgttttcctggtgctaaatgctttgataacaatca
||||||| ||| ||||||||||||| ||||||| || ||||| |||||||||| | ||||| | | || ||| |||| |||||||||| |||||||||||||||| || | | | || | | |||| |||| | | | |||||| | ||
AGAGAAGTTGCTACATTAGTTCAAAAAGAAAATAGCAAATTTCACGGAGATCTTAGAATTCCATCTTCAATATTTGTTAAGTGTGATGTTAGTAATGCAGgtaagagtttttaacttttagatgttaactgaaaggtttccctaccatgaccttaaatatacactttaatatgcag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29670807|gb|CB667082.1|CB667082
EST:     TCTTAAAGTTCCAAGTGCTATGTTTATTAAATGTGATGTTACTAATGCAG                         GTGATCTTTCTGCTGCCTTTGGAAAACATGTGGACACATATGGTGGACTAG
genomic: TCTTAAAGTTCCAAGTGCTATGTTTATTAAATGTGATGTTACTAATGCAGgtaagagtct ... tcatatgtagGTGATCTTTCTGCTGCCTTTGGAAAACATGTGGACACATATGGTGGACTAG