1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GACGAGATCGAGCGCATCCGCCGCGAGTTCGAGGACGCCAAGCGGAACTACCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAGgtctcagtgtttgttctttttactatccgcatccgcttcttcttgctgtatgaaaaaaaataaggttcttgaatccgtgcttgggggatgttgcttggttcgcctttgctgggttttcag
species | Oryza sativa |
transcript | LOC_Os09g25640.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAG GCATTTATGTGAACAAGAACGTCAAACTGGATGACCTGCAAGTCTATGGTTEST: gi|88575071|gb|CI666840.1|CI666840
genomic: CCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAGgtctcagtgt ... gggttttcagGCATTTATGTGAACAAGAACGTCAAACTGGATGACCTGCAAGTCTATGGTT
EST: CCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAG GCATTTATGTGAACAAGAACGTCAAACTGGATGACCTGCAAGTCTATGGTTEST: gi|58655853|gb|CK044533.1|CK044533
genomic: CCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAGgtctcagtgt ... gggttttcagGCATTTATGTGAACAAGAACGTCAAACTGGATGACCTGCAAGTCTATGGTT
EST: CCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAG GCATTTATGTGAACAAGAACGTCAAACTGGACGACCTGCAAGTCTATGGTTEST: gi|88592393|gb|CI710495.1|CI710495
genomic: CCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAGgtctcagtgt ... gggttttcagGCATTTATGTGAACAAGAACGTCAAACTGGATGACCTGCAAGTCTATGGTT
EST: CCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAG GCATTTATGTGAACAAGAACGTCAAACTGGATGACCTGCAEST: gi|27554405|gb|CA998305.1|CA998305
genomic: CCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAGgtctcagtgt ... gggttttcagGCATTTATGTGAACAAGAACGTCAAACTGGATGACCTGCA
EST: CCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAG GCATTTATGTGAACAAGAACGTCAAACTGGATGACCTGCAAGTCTATGGTTEST: gi|58672907|gb|CK061593.1|CK061593
genomic: CCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAGgtctcagtgt ... gggttttcagGCATTTATGTGAACAAGAACGTCAAACTGGATGACCTGCAAGTCTATGGTT
EST: CCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAG GCATTTATGTGAACAAGAACGTCAAACTGGACGACCTGCAAGTCTATGGTTEST: gi|88350027|gb|CI621958.1|CI621958
genomic: CCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAGgtctcagtgt ... gggttttcagGCATTTATGTGAACAAGAACGTCAAACTGGATGACCTGCAAGTCTATGGTT
EST: CCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAG GCATTTATGTGAACAAGAACGTCAAACTGGATGACCTGCAAGTCTATGGTT
genomic: CCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAGgtctcagtgt ... gggttttcagGCATTTATGTGAACAAGAACGTCAAACTGGATGACCTGCAAGTCTATGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGAGATCGAGCGCATCCGCCGCGAGTTCGAGGACGCCAAGCGGAACTACCTCAGCATCCCCGTCGCCATCAAGGACATGGCCAAGATGAACCCGCAAGgtctcagtgtttgttctttttactatccgcatccgcttcttcttgctgtatgaaaaaaaataaggttcttgaatccgtgcttgggggatgttgcttggttcgcctttgctgggttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG