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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGGAATGCCCCTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATTgtgagtacataatacttagctgaaaactggagtatttatgttggagcccatctgtaacttgtattttgtacag

Basic information

species Oryza sativa
transcript LOC_Os09g24570.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g24570.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G057037_T02 (Zea mays), 5'ss of exon 2
GAGTGGAATGCCCCTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATTgtgagtacataatacttagctgaaaactggagtatttatgttggagcccatctgtaacttgtattttgt-acag----
|||||||||||||||||||||||||||   |||||| |||||||||| |||||  | |||  |||||||||||     | |  |||||||||  ||  || || | ||    || | |||| | | ||||||  |||    
GAGTGGAATGCCCCTAAGCCAATGCATCCTTCTCTTTTGAATGAGGCCTTGCGATGGACAGCTgtgagtacatctatgtcaaatgaaaactgctgtcattgtggttgatgatattt-taacatatgttttgttgcagacag

upper sequence: LOC_Os09g24570.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G057037_T01 (Zea mays), 5'ss of exon 2
GAGTGGAATGCCCCTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATTgtgagtacataatacttagctgaaaactggagtatttatgttggagcccatctgtaacttgtattttgt-acag
|||||||||||||||||||||||||||   |||||| |||||||||| |||||  | |||  |||||||||||     | |  |||||||||  ||  || || | ||    || | |||| | | ||||||  |||
GAGTGGAATGCCCCTAAGCCAATGCATCCTTCTCTTTTGAATGAGGCCTTGCGATGGACAGCTgtgagtacatctatgtcaaatgaaaactgctgtcattgtggttgatgatattt-taacatatgttttgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86885641|gb|CI309768.1|CI309768
EST:     CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATT                         TCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
genomic: CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATTgtgagtacat ... ttttgtacagTCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
EST: gi|88422549|gb|CI571531.1|CI571531
EST:     CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATT                         TCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
genomic: CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATTgtgagtacat ... ttttgtacagTCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
EST: gi|88397836|gb|CI583154.1|CI583154
EST:     CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATT                         TCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
genomic: CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATTgtgagtacat ... ttttgtacagTCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
EST: gi|88592426|gb|CI710528.1|CI710528
EST:     CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATT                         TCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
genomic: CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATTgtgagtacat ... ttttgtacagTCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
EST: gi|88430811|gb|CI596925.1|CI596925
EST:     CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATT                         TCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
genomic: CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATTgtgagtacat ... ttttgtacagTCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
EST: gi|88444947|gb|CI696389.1|CI696389
EST:     CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATT                         TCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
genomic: CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATTgtgagtacat ... ttttgtacagTCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
EST: gi|88433774|gb|CI582096.1|CI582096
EST:     CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATT                         TCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
genomic: CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATTgtgagtacat ... ttttgtacagTCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
EST: gi|88315799|gb|CI617272.1|CI617272
EST:     CTAAGCCAATGCATGAGTCTCTTCTGAATGATGCTTTGCGGCGAACAATT                         TCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
genomic: CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATTgtgagtacat ... ttttgtacagTCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
EST: gi|88403849|gb|CI611504.1|CI611504
EST:     CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATT                         TCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG
genomic: CTAAGCCAATGCATGAGTCTCTTCTGAATGAGGCTTTGCGGCGAACAATTgtgagtacat ... ttttgtacagTCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGG