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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGATGCTCATTCATCAGGGGAAGGTGCTCAAGGATGACACCACATTGGATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacagcacctgtttgatgttatatggctattacctggcgcaaaatcatgaatatcatacttatcgtacaataatccatggaatgtcaaggtattc...

Basic information

species Oryza sativa
transcript LOC_Os09g24200.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g24200.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G061620_T05 (Zea mays), 5'ss of exon 2
ACAGATGCTCATTCATCAGGGGAAGGTGCTCAAGGATGACACCACATTGGATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacagcacctgtttgatgttatatggctattacctgg-cgca----aaatcatgaatatcatacttatcgtacaataatccatggaatgtcaaggtattc---
|||  |||| || || |||||||||||||||||||| ||||| |||||||| |||||| ||||  ||||||| |  || |||||||||||||| |||||||| ||      || |||||  | ||   ||| |   || ||| | ||    |||||| |  | |   ||||   |||  |||||  |   | |    || |||     
ACAAGTGCTTATACACCAGGGGAAGGTGCTCAAGGACGACACAACATTGGAGGAAAACCAAGTAGTTGAAAATAATTTTCTTGTTATAATGCTCAGACAGgtaggc----tacttgtttattattc--tggttgacacatgggcacatgacaaatcacgggtgtatgacttg--gtatgataataaaattattactgagatatgaata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88410051|gb|CI573290.1|CI573290
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|58672603|gb|CK061289.1|CK061289
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|88400724|gb|CI596145.1|CI596145
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|33691318|gb|CF319557.1|CF319557
EST:     ATGAAAACAAAGTTCTTGANAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCANAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|56157493|gb|D24336.3|D24336
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|88317010|gb|CI625647.1|CI625647
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|88316529|gb|CI622775.1|CI622775
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|58686007|gb|CK074694.1|CK074694
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|88377574|gb|CI605409.1|CI605409
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|88717896|gb|CI739408.1|CI739408
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|58602384|gb|CK012912.1|CK012912
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|86884299|gb|CI311704.1|CI311704
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|88693324|gb|CI736899.1|CI736899
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|29678389|gb|CB674664.1|CB674664
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|88399554|gb|CI583288.1|CI583288
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|88346546|gb|CI623003.1|CI623003
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|88405923|gb|CI591318.1|CI591318
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|58609238|gb|CK037271.1|CK037271
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
EST: gi|88571905|gb|CI663278.1|CI663278
EST:     ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAG                         GGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT
genomic: ATGAAAACAAAGTTCTTGAAAACAGCTTCCTTGTTATAATGCTTAGACAGgtgggtacag ... actttcacagGGTAAGGGCTCATCAAGTTCAGCTCCTGCTACATCTAAGGCACCCTCAAAT