1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAGGTAGCCATGCGGGCAACAATCTGGCCATGCAGGAGTTCATGCTTTTACCTGTGGGAGCATCTTCATTTTCTGAGGCTCTTCGCATGGGTAGTGAAGgtaactttatgtgtttaattgatagtgtgatacacatacttttggaattctaattgtccaatgcatgcccttatgcacgattaatttggtactgtatttg...
species | Oryza sativa |
transcript | LOC_Os09g20820.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCTGTGGGAGCATCTTCATTTTCTGAGGCTCTTCGCATGGGTAGTGAAG TT-ACCATGCCCTEST: gi|88688642|gb|CI732218.1|CI732218
genomic: ACCTGTGGGAGCATCTTCATTTTCTGAGGCTCTTCGCATGGGTAGTGAAGgtaactttat ... catgttacagTTTACCATGCCCT
EST: ATTTTCTGAGGCTCTTCGCATGGGTAGTGAAG TTTACCATGCCCTAAAGGGCATCATTAAGGCGAAATATGGTCAAGATGCATEST: gi|88690860|gb|CI734939.1|CI734939
genomic: ATTTTCTGAGGCTCTTCGCATGGGTAGTGAAGgtaactttat ... catgttacagTTTACCATGCCCTAAAGGGCATCATTAAGGCGAAATATGGTCAAGATGCAT
EST: ATTTTCTGAGGCTCTTCGCATGGGTAGTGAAG TTTACCATGCCCTAAAGGGCATCATTAAGGCGAAATATGGTCAAGATGCATEST: gi|58604385|gb|CK014913.1|CK014913
genomic: ATTTTCTGAGGCTCTTCGCATGGGTAGTGAAGgtaactttat ... catgttacagTTTACCATGCCCTAAAGGGCATCATTAAGGCGAAATATGGTCAAGATGCAT
EST: ACCTGTGGGAGCATCTTCATTTTCTGAGGCTCTTCGCATGGGTAGTGAAG TTTACCATGCCCTAAAGGGCATCATTAAGGCGAAATATGGTCAAGATGCATEST: gi|88691935|gb|CI735510.1|CI735510
genomic: ACCTGTGGGAGCATCTTCATTTTCTGAGGCTCTTCGCATGGGTAGTGAAGgtaactttat ... catgttacagTTTACCATGCCCTAAAGGGCATCATTAAGGCGAAATATGGTCAAGATGCAT
EST: ATTTTCTGAGGCTCTTCGCATGGGTAGTGAAG TTTACCATGCCCTAAAGGGCATCATTAAGGCGAAATATGGTCAAGATGCATEST: gi|88693829|gb|CI735332.1|CI735332
genomic: ATTTTCTGAGGCTCTTCGCATGGGTAGTGAAGgtaactttat ... catgttacagTTTACCATGCCCTAAAGGGCATCATTAAGGCGAAATATGGTCAAGATGCAT
EST: ATTTTCTGAGGCTCTTCGCATGGGTAGTGAAG TTTACCATGCCCTAAAGGGCATCATTAAGGCGAAATATGGTCAAGATGCAT
genomic: ATTTTCTGAGGCTCTTCGCATGGGTAGTGAAGgtaactttat ... catgttacagTTTACCATGCCCTAAAGGGCATCATTAAGGCGAAATATGGTCAAGATGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGTAGCCATGCGGGCAACAATCTGGCCATGCAGGAGTTCATGCTTTTACCTGTGGGAGCATCTTCATTTTCTGAGGCTCTTCGCATGGGTAGTGAAGgtaactttatgtgtttaattgatagtgtgatacacatacttttggaattctaattgtccaatgcatgcccttatgcacgattaatttggtactgtatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA