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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTATCCTAATTTGACTTCCTCTCAATCATCAGAAGGACGCAATCAGCGTAGCAGTGGTACTGTTTTGCATTTTGGATGTATCACAATTTCGTGTCCAAGgtaatttgtagttccatgttatttttctatcttgaatttcctaaagtcctgtatgtgaactcgtgtatgcagtctcactcctatgcattttttgaagaaa...

Basic information

species Oryza sativa
transcript LOC_Os09g15430.4
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g15430.4 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G116952_T03 (Zea mays), 5'ss of exon 2
CCTATCCTAATTTGACTTCCTCTCAATCATCAGAAGGACGCAATCAGCGTAGCAGTGGTACTGTTTTGCATTTTGGATGTATCACAATTTCGTGTCCAAGgtaatttgtagttccatgttatttttctatcttgaatttcctaaagtcctgtatgtgaactcg--tgtatgcagtctcactcctatgcattttttgaagaaa-
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CATATCCTACTTTGACTCCTTCTCAGTCATCAGAAGGACGCAACCATCGTACCAGTGGTATTGTTTTGCATCTTGGATGTATCTCAATTTCTTGCCCAAGgtaacttttagt-ccatgccactttccaacctggtagatg--aatggacaaattgttagttcgattgaatgggttattataaccagggtgtccaagaattaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29670629|gb|CB666904.1|CB666904
EST:     AGCAGTGGTACTGTTTTGCATTTTGGATGTATCACAATTTCGTGTCCAAG                         GCCTAGCATATTGGCTTATCATTTCAAGACAGCTGTAGACTGTTTCTTTGC
genomic: AGCAGTGGTACTGTTTTGCATTTTGGATGTATCACAATTTCGTGTCCAAGgtaatttgta ... tacattacagGCCTAGCATATTGGCTTATCATTTCAAGACAGCTGTAGACTGTTTCTTTGC
EST: gi|218500518|gb|FG959268.1|FG959268
EST:     TGCATTTTGGATGTATCACAATTTCGTGTCCAAG                         GCCTAGCATATTGGCTTATCATTTCAAGACAGCTGTAGACTGTTTCTTTGC
genomic: TGCATTTTGGATGTATCACAATTTCGTGTCCAAGgtaatttgta ... tacattacagGCCTAGCATATTGGCTTATCATTTCAAGACAGCTGTAGACTGTTTCTTTGC