Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctactcctcccaacttgcttactgattagttgttttcgttgatttagtctggtagtagcattgctttgggggatactggtgtcatagatcgtttc...

Basic information

species Oryza sativa
transcript LOC_Os08g44380.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88674638|gb|CI728751.1|CI728751
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|33665236|gb|CF296203.1|CF296203
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88728373|gb|CI751883.1|CI751883
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88317436|gb|CI628085.1|CI628085
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88673267|gb|CI726042.1|CI726042
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88340789|gb|CI636949.1|CI636949
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|33823164|gb|CF337382.1|CF337382
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|33694097|gb|CF322336.1|CF322336
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|38474906|gb|CF959039.1|CF959039
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88666143|gb|CI716299.1|CI716299
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88696082|gb|CI739657.1|CI739657
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|55439434|gb|CV733025.1|CV733025
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88317464|gb|CI628113.1|CI628113
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|87008403|gb|CI301161.1|CI301161
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|55433273|gb|CV729688.1|CV729688
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88689065|gb|CI732641.1|CI732641
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|55433210|gb|CV729649.1|CV729649
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88675717|gb|CI729830.1|CI729830
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88972348|gb|CI717089.1|CI717089
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88665925|gb|CI716081.1|CI716081
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88905697|gb|CI712996.1|CI712996
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88594599|gb|CI714557.1|CI714557
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88317423|gb|CI628072.1|CI628072
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88674146|gb|CI728259.1|CI728259
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88984008|gb|CI723572.1|CI723572
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|33655758|gb|CF278372.1|CF278372
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|33671594|gb|CF299833.1|CF299833
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|33822843|gb|CF337227.1|CF337227
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88688101|gb|CI731677.1|CI731677
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88744159|gb|CI767519.1|CI767519
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88905208|gb|CI712507.1|CI712507
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|33659833|gb|CF282446.1|CF282446
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGCAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|24208887|gb|AU225914.1|AU225914
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|33657180|gb|CF279794.1|CF279794
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88905412|gb|CI712711.1|CI712711
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|58675234|gb|CK063921.1|CK063921
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88665907|gb|CI716063.1|CI716063
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88671176|gb|CI725292.1|CI725292
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88973547|gb|CI717975.1|CI717975
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|87017186|gb|CI301222.1|CI301222
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|89173151|gb|CI720981.1|CI720981
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCANTCT-CCAGGTTGTTGCTG
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCA-TCTCCCAGGTTGTTGCTG
EST: gi|2442273|gb|C74044.1|C74044
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88665819|gb|CI715975.1|CI715975
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88671907|gb|CI725849.1|CI725849
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88665908|gb|CI716064.1|CI716064
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88728051|gb|CI751561.1|CI751561
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTNA-AAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTG
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTT-ACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTG
EST: gi|88672772|gb|CI726888.1|CI726888
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88672355|gb|CI726471.1|CI726471
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88719546|gb|CI743056.1|CI743056
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|86859602|gb|CI288904.1|CI288904
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|33655135|gb|CF277749.1|CF277749
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88677289|gb|CI729947.1|CI729947
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88673419|gb|CI727532.1|CI727532
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88593873|gb|CI713827.1|CI713827
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88674563|gb|CI728676.1|CI728676
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88905333|gb|CI712632.1|CI712632
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|33662471|gb|CF293438.1|CF293438
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88675347|gb|CI727462.1|CI727462
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|89172409|gb|CI721468.1|CI721468
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88669467|gb|CI723385.1|CI723385
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88594804|gb|CI714762.1|CI714762
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88675245|gb|CI727360.1|CI727360
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|55437784|gb|CV732184.1|CV732184
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88671066|gb|CI725182.1|CI725182
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88983956|gb|CI723524.1|CI723524
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88674720|gb|CI728833.1|CI728833
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|33664770|gb|CF295737.1|CF295737
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88688713|gb|CI732289.1|CI732289
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|86595674|gb|CI288367.1|CI288367
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|218488573|gb|FG946164.1|FG946164
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88676485|gb|CI730598.1|CI730598
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88688384|gb|CI731960.1|CI731960
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88673331|gb|CI725956.1|CI725956
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88675243|gb|CI727358.1|CI727358
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88308934|gb|CI654217.1|CI654217
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88317397|gb|CI628046.1|CI628046
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88347630|gb|CI634315.1|CI634315
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|86906445|gb|CI294568.1|CI294568
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88691648|gb|CI733726.1|CI733726
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
EST: gi|88352043|gb|CI626043.1|CI626043
EST:     AGTGTTGTTGAGTTATCGGCCGCAAACATGAG                         TAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA
genomic: AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctact ... tcaattgcagTAAGTTACAAACCGAGGCTCTCAAGGAAGCCATCTCCCAGGTTGTTGCTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTGTTGTTGAGTTATCGGCCGCAAACATGAGgtactctactcctcccaacttgcttactgattagttgttttcgttgatttagtctggtagtagcattgctttgggggatactggtgtcatagatcgtttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggggat