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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCCGCAACTCCAACTCCATGCGCGAGTTCCTCGAGAAGAATTACAAGGACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatatacacttcacactgaataattttactagttaaaactacctctagctttgatccactaccactgaatcagtaactgtgcttctgaagacaga...

Basic information

species Oryza sativa
transcript LOC_Os08g43540.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g43540.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G050467_T01 (Zea mays), 5'ss of exon 2
CGGCCGCAACTCCAACTCCATGCGCGAGTTCCTCGAGAAGAATTACAAGGACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatatacacttcacactgaataattttactag-ttaaaactacctctagctttgatccactaccactgaatcagtaactgt-gcttctgaagacaga--
|||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||| |||||| |||| |||||||||||||| |   |  |       | | ||    || | | |  ||||   | ||    |      | |   |  ||   ||||  ||  |  | | ||    ||  
CGGCCGCAACTCCAACTCCATGCGCGAGTTTCTCGAGAAGAATTACAAGGAGACGTCCGGTAAGGAGACCATCAAGCTCGCCATCAGAGCACTCCTTGAGgtatacactcaagcact----taattagcactagtggatccaaacaggcccttttatgtgattattcagagagacatagtacttgaagggtgtcaattgggagc

upper sequence: LOC_Os08g43540.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA02G05190.1 (Glycine max), 5'ss of exon 2
CGGCCGCAACTCCAACTCCATGCGCGAGTTCCTCGAGAAGAATTACAAGGACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatatacacttcacactgaataattttactagttaa-aactacctctagctttgatccactaccactgaatcagtaactgtgcttctgaagacaga--
|||  | ||||| || || ||  | ||||||||||||||||| || ||||||||||| ||| |||||||  ||||| | || || || ||  | ||||| ||   | |      ||    ||   |   |||     | || |  |   | ||   ||  |  |   || ||   |  | |||   | || | ||    |   
CGGGAGGAACTCGAATTCGATTAGGGAGTTCCTCGAGAAGAACTATAAGGACACCTCTGGCCAGGAGACTGTCAAGTTGGCTATTCGCGCATTGCTTGAAgtgagt-ttcgtg-tttgttcttgttgtgtttgtggatgaatagatggttttattatttttatagagcctcttt-tttgcaaccaaggttttaaattgtggtc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88205857|gb|CI205706.1|CI205706
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|15857659|gb|BI810471.1|BI810471
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATT-CGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86497594|gb|CI140227.1|CI140227
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86478956|gb|CI121589.1|CI121589
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|29656751|gb|CB653026.1|CB653026
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88902726|gb|CI088264.1|CI088264
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|27554446|gb|CA998346.1|CA998346
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86492872|gb|CI135505.1|CI135505
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86526135|gb|CI166341.1|CI166341
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86851475|gb|CI314073.1|CI314073
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTTTCGAGACCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86594123|gb|CI262351.1|CI262351
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|89166739|gb|CI104025.1|CI104025
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86418637|gb|CI032846.1|CI032846
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86485920|gb|CI128553.1|CI128553
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|89180829|gb|CI009737.1|CI009737
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88201738|gb|CI202093.1|CI202093
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86534557|gb|CI174763.1|CI174763
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|58030577|gb|CX728120.1|CX728120
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88203289|gb|CI203138.1|CI203138
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86512813|gb|CI155446.1|CI155446
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88966161|gb|CI013037.1|CI013037
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88280474|gb|CI401672.1|CI401672
EST:     CCACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: -CACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88200330|gb|CI200180.1|CI200180
EST:     CAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: CAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88213417|gb|CI213266.1|CI213266
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86854320|gb|CI254265.1|CI254265
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|87013995|gb|CI271386.1|CI271386
EST:     ACGCCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|89181299|gb|CI112805.1|CI112805
EST:     GCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: GCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88214415|gb|CI214264.1|CI214264
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86859585|gb|CI265308.1|CI265308
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88903217|gb|CI088755.1|CI088755
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGGACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|33657666|gb|CF280280.1|CF280280
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|33665450|gb|CF296417.1|CF296417
EST:     ACCCCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACCCAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|89187800|gb|CI009784.1|CI009784
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86902839|gb|CI312216.1|CI312216
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86485726|gb|CI128359.1|CI128359
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88461453|gb|CI526961.1|CI526961
EST:     AGCCCTCCTTGAG                         GTTGTCGAGANCGGTGGCAAGAACATCGAGATTGCGGTGATNACACACAAG
genomic: AGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|87010584|gb|CI283659.1|CI283659
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86592671|gb|CI268336.1|CI268336
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|33381951|gb|CF197294.1|CF197294
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86517784|gb|CI157990.1|CI157990
EST:     ACACCTCCGACAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88214546|gb|CI214395.1|CI214395
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|89175837|gb|CI042858.1|CI042858
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88502535|gb|CI430041.1|CI430041
EST:     AGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: AGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|112786113|gb|EE592084.1|EE592084
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88201087|gb|CI201442.1|CI201442
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|8528036|gb|AU092851.1|AU092851
EST:     ACA-CTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|33654966|gb|CF277580.1|CF277580
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86256757|gb|CI061520.1|CI061520
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88531037|gb|CI459476.1|CI459476
EST:     TCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTTTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: TCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88206183|gb|CI206032.1|CI206032
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|58680083|gb|CK068770.1|CK068770
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88537177|gb|CI464994.1|CI464994
EST:     CCACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86486574|gb|CI129207.1|CI129207
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|89198155|gb|CI015544.1|CI015544
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86544514|gb|CI184720.1|CI184720
EST:     CCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: CCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|15854375|gb|BI807171.1|BI807171
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88271371|gb|CI387424.1|CI387424
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|87022450|gb|CI267587.1|CI267587
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86507473|gb|CI150106.1|CI150106
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88281779|gb|CI403175.1|CI403175
EST:     GGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: GGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88200130|gb|CI199980.1|CI199980
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88280982|gb|CI402180.1|CI402180
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|29672230|gb|CB668505.1|CB668505
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86541305|gb|CI181511.1|CI181511
EST:     CACCTCCGGCAAGGAGACCGATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: CACCTCCGGCAAGGAGACC-ATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88206244|gb|CI206093.1|CI206093
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86592767|gb|CI268432.1|CI268432
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86510092|gb|CI152725.1|CI152725
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88200498|gb|CI200348.1|CI200348
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88212866|gb|CI210717.1|CI210717
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|29656752|gb|CB653027.1|CB653027
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTTGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86509253|gb|CI151886.1|CI151886
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88980467|gb|CI026622.1|CI026622
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88968482|gb|CI098724.1|CI098724
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88215656|gb|CI215505.1|CI215505
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88280764|gb|CI401962.1|CI401962
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTC-AGAGCNGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAA
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGC-GGTGGCAAGAACATCGAGATTGCGGTGATGACACACAA
EST: gi|88207867|gb|CI207716.1|CI207716
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88835406|gb|CI005096.1|CI005096
EST:     ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|86517835|gb|CI158041.1|CI158041
EST:     ACACCTCCGACAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG
EST: gi|88279576|gb|CI400576.1|CI400576
EST:     ACACCTCCNGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAG                         GTTGTCGAGAGCGGTGGCAAGAACATCGAGATTTCGGTGATTACACACAAG
genomic: ACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 69 (upstream exon), 70 (downstream exon)
Score: 45

CGGCCGCAACTCCAACTCCATGCGCGAGTTCCTCGAGAAGAATTACAAGGACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatat ... atgtctccagGTTGTCGAGAGCGGTGGCAAGAACATCGAGATTGCGGTGATGACACACAAGGATGGCCTCCGCGAGCTGGAGGAGGCTGAGATCGACGAGTACGTGGCTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGCCGCAACTCCAACTCCATGCGCGAGTTCCTCGAGAAGAATTACAAGGACACCTCCGGCAAGGAGACCATCAAGCTTGCCATCCGAGCCCTCCTTGAGgtatatatatacacttcacactgaataattttactagttaaaactacctctagctttgatccactaccactgaatcagtaactgtgcttctgaagacaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT