1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGGATATAAATGAGCGTCAAGAGGAAGATATAGGCAAGGTATCTGCTGTACTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGgtaagtttgttaaccgtcattcattgaatattcttttatcattatactccctccgtcccataatataagagattttgggtggatgtgacatatcctagta...
species | Oryza sativa |
transcript | LOC_Os08g42740.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATG GAACATCAGCAAGCTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCGEST: gi|58680866|gb|CK069553.1|CK069553
genomic: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGgtaagtttgt ... ctctgttcagGAACATCAGCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCG
EST: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATG GAACATCAGCAAGCTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCGEST: gi|88312074|gb|CI580239.1|CI580239
genomic: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGgtaagtttgt ... ctctgttcagGAACATCAGCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCG
EST: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATG GAACATCAGCAAGTTAAGCGATGAATGGTTTGGGGATGAAGAAAAAGTTCGEST: gi|29622679|gb|CB627690.1|CB627690
genomic: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGgtaagtttgt ... ctctgttcagGAACATCAGCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCG
EST: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATG GAACATCAGCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCGEST: gi|29671896|gb|CB668171.1|CB668171
genomic: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGgtaagtttgt ... ctctgttcagGAACATCAGCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCG
EST: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATG GAACATCAGCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCGEST: gi|29669832|gb|CB666107.1|CB666107
genomic: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGgtaagtttgt ... ctctgttcagGAACATCAGCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCG
EST: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATG GAACATCAGCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCGEST: gi|33793942|gb|CF322859.1|CF322859
genomic: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGgtaagtttgt ... ctctgttcagGAACATCAGCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCG
EST: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTAC----- -AA-AT--GCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCG
genomic: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGgtaagtttgt ... ctctgttcagGAACATCAGCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGATATAAATGAGCGTCAAGAGGAAGATATAGGCAAGGTATCTGCTGTACTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGgtaagtttgttaaccgtcattcattgaatattcttttatcattatactccctccgtcccataatataagagattttgggtggatgtgacatatcctagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG