1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTCTCTCCAGCGACCAGCGGTGGTGGCCGTCTCTAGCGCCGGCTGTCGTTAGGGGAGAAGCCGGGTACTCGTAGTAGGTTCTGGCGTGACGTTTTGAAGgtgagaaatcacaaaccaaaaattaatttgagattgtattgttcttttgcactgattaattgcatgaaaccctaattaggtagattgtgggtttattggt...
species | Oryza sativa |
transcript | LOC_Os08g42420.5 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TAGGGGAGAAGCCGGGTACTCGTAGTAGGTTCTGGCGTGACGTTTTGAAG GACTGTGATGTGTGATCCCCACTGGCATGTTGCATCCTAGGTTCCTGGTTGEST: gi|88397284|gb|CI580794.1|CI580794
genomic: TAGGGGAGAAGCCGGGTACTCGTAGTAGGTTCTGGCGTGACGTTTTGAAGgtgagaaatc ... gcttgtgcagGACTGTGATGTGTGATCCCCACTGGCATGTTGCATCCTAGGTTCCTGGTTG
EST: TAGGGGAGAAGCCGGGTAATCGTAGTAGGTTCTGGCGTGACTTTTTGAAG GACTGTGATGTGTGATCCCCACTGGCATGTTGCATCCTAGGTTCCTGGCTT
genomic: TAGGGGAGAAGCCGGGTACTCGTAGTAGGTTCTGGCGTGACGTTTTGAAGgtgagaaatc ... gcttgtgcagGACTGTGATGTGTGATCCCCACTGGCATGTTGCATCCTAGGTTCCTGG-TT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCTCTCCAGCGACCAGCGGTGGTGGCCGTCTCTAGCGCCGGCTGTCGTTAGGGGAGAAGCCGGGTACTCGTAGTAGGTTCTGGCGTGACGTTTTGAAGgtgagaaatcacaaaccaaaaattaatttgagattgtattgttcttttgcactgattaattgcatgaaaccctaattaggtagattgtgggtttattggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG