Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctcgatgatatcctttttccgcgatggtttggtttcggtttgatctgtctgtgtagtggtttttgatgggatgttgtttgtgtgcgcag

Basic information

species Oryza sativa
transcript LOC_Os08g41810.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g41810.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G148744_T01 (Zea mays), 5'ss of exon 2
GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctcgatgatatcctttttccgcgatggtttggtttcggtttgatctgtctgtg-tagtggtttttgatgggatgttgtttgtgtgcgcag
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GTGAAGTACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctcgcccctctttgcgttgctcctgcgttcgaggtcc-ttccatcattctgtggtgctaatggtgggttgtttggcgtt-gtctgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88569588|gb|CI660763.1|CI660763
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88736061|gb|CI759569.1|CI759569
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88329008|gb|CI658658.1|CI658658
EST:     GGCAAGTACTCGACGGAGCCGTCAAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCATTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|3761527|gb|C98775.1|C98775
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88339235|gb|CI633806.1|CI633806
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88742236|gb|CI765744.1|CI765744
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88569569|gb|CI660744.1|CI660744
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88590119|gb|CI708948.1|CI708948
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88693808|gb|CI735385.1|CI735385
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88349920|gb|CI634455.1|CI634455
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88314950|gb|CI610009.1|CI610009
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88346135|gb|CI634008.1|CI634008
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88335987|gb|CI645588.1|CI645588
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88348584|gb|CI634179.1|CI634179
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88732230|gb|CI757078.1|CI757078
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|38565668|gb|CK085121.1|CK085121
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|3767152|gb|AU031262.1|AU031262
EST:     GAGCCGTCCAACCCGACCANGT                         CGGCCAAGGCCATNGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88576077|gb|CI670222.1|CI670222
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88591466|gb|CI707502.1|CI707502
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88357622|gb|CI623676.1|CI623676
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGAACAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88290637|gb|CI667010.1|CI667010
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88308770|gb|CI653657.1|CI653657
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88731799|gb|CI753519.1|CI753519
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|86899886|gb|CI300046.1|CI300046
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88362003|gb|CI607003.1|CI607003
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88368933|gb|CI636710.1|CI636710
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88309084|gb|CI654703.1|CI654703
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|426713|gb|D22783.1|D22783
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88337583|gb|CI630880.1|CI630880
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88327780|gb|CI657824.1|CI657824
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88586833|gb|CI704553.1|CI704553
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88342189|gb|CI658844.1|CI658844
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88296258|gb|CI667648.1|CI667648
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88721296|gb|CI744595.1|CI744595
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88325699|gb|CI648142.1|CI648142
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88392867|gb|CI624098.1|CI624098
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88742322|gb|CI765830.1|CI765830
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|11173119|gb|AU164622.1|AU164622
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88575603|gb|CI669748.1|CI669748
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88340872|gb|CI637032.1|CI637032
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88570837|gb|CI662210.1|CI662210
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88692632|gb|CI736207.1|CI736207
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88306868|gb|CI672036.1|CI672036
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|568190|gb|D39025.1|D39025
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88349906|gb|CI634441.1|CI634441
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|427670|gb|D23804.1|D23804
EST:     GGCAAGTACTNGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88332741|gb|CI660259.1|CI660259
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|33670174|gb|CF298413.1|CF298413
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
EST: gi|88331769|gb|CI640800.1|CI640800
EST:     GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGT                         CGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
genomic: GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 73 (downstream exon)
Score: 90

GGCAAGTACTCGACGGAGCCGTCCAACCCGACCAAGTgtaagatctc ... gtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG




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