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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattccttctccattctgccttcttactttttgatggcacatctcatagccaatgtgatcgcaacttgtgccaatcaccattttgtgcaaattttt...

Basic information

species Oryza sativa
transcript LOC_Os08g41390.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8858040|gb|AU095358.1|AU095358
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|88316943|gb|CI625580.1|CI625580
EST:     GATTCAAGCCGTGACCCGTGGGACAACCTT-AAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAG
genomic: GATTCAAGCCGTGACC-GTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAG
EST: gi|58655964|gb|CK044644.1|CK044644
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|8858050|gb|AU095368.1|AU095368
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGGATCTAGGTATCAAGACCATGNAAGAAAGG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGG-ATCTAGGTATCAAGACCATG-AAGAAAGG
EST: gi|58690253|gb|CK078940.1|CK078940
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|88394593|gb|CI605934.1|CI605934
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTAT
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTAT
EST: gi|58690739|gb|CK079426.1|CK079426
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|88409713|gb|CI569003.1|CI569003
EST:     GATTCAAGCCGTGACCGCTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCA-GTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGATGAAAGG
genomic: GATTCAAGCCGTGACCG-TGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGG
EST: gi|88361507|gb|CI605288.1|CI605288
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|1631494|gb|C19223.1|C19223
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|58665256|gb|CK053942.1|CK053942
EST:     TGATTCAAGCCGTGACCGTGGGACACCCCTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|58675334|gb|CK064021.1|CK064021
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGACAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|58694438|gb|CK083125.1|CK083125
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|88394916|gb|CI607643.1|CI607643
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATC
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATC
EST: gi|58687081|gb|CK075768.1|CK075768
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|88324708|gb|CI626913.1|CI626913
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTT
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTT
EST: gi|58675080|gb|CK063767.1|CK063767
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|88387790|gb|CI587878.1|CI587878
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGG
EST: gi|218486102|gb|FG952697.1|FG952697
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|88421837|gb|CI611716.1|CI611716
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACC
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACC
EST: gi|218492631|gb|FG962246.1|FG962246
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|58667007|gb|CK055693.1|CK055693
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTA
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTA
EST: gi|4880950|gb|AU065249.1|AU065249
EST:     AGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: AGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|29624443|gb|CB629454.1|CB629454
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|88343363|gb|CI621731.1|CI621731
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGT
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGT
EST: gi|58608921|gb|CK036954.1|CK036954
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|58668442|gb|CK057128.1|CK057128
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGAACATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|58670205|gb|CK058891.1|CK058891
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|58683729|gb|CK072416.1|CK072416
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|58682636|gb|CK071323.1|CK071323
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|88358456|gb|CI608356.1|CI608356
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|29675035|gb|CB671310.1|CB671310
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|33380928|gb|CF196271.1|CF196271
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|29666721|gb|CB662996.1|CB662996
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|29626371|gb|CB631382.1|CB631382
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|58608216|gb|CK036249.1|CK036249
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCCAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|58610628|gb|CK038340.1|CK038340
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|58665497|gb|CK054183.1|CK054183
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
EST: gi|29628610|gb|CB633621.1|CB633621
EST:     TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG                         GTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG
genomic: TGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAGgtacaattcc ... ttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCG