Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTCGCCGGCGGTGCCCGCCCTCACCAAGACCCTCCTCGAGGACGTCAAGCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaaccaacctacctacctagcttcatcgatcgaccacgtccatagctaagggttttaactggctaacccgcaaacccgcttacaggtcaataaa...

Basic information

species Oryza sativa
transcript LOC_Os08g39300.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88761628|gb|CI771184.1|CI771184
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88735880|gb|CI757455.1|CI757455
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88583206|gb|CI700673.1|CI700673
EST:     GCAGATCTTCAAGAACACCACCGGCACCCCCTTCCTCTTCCCC-CCACCG                         GGACGGGGGCGTGGGACAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88454227|gb|CI567832.1|CI567832
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCAC-G                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88336338|gb|CI648925.1|CI648925
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88689671|gb|CI733247.1|CI733247
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88577236|gb|CI673798.1|CI673798
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88377300|gb|CI600455.1|CI600455
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88312149|gb|CI580314.1|CI580314
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCAACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGAAGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88342369|gb|CI645891.1|CI645891
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88367219|gb|CI563983.1|CI563983
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88904422|gb|CI711730.1|CI711730
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACANGCTGTCGCCGGGGGAAA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|33666875|gb|CF297842.1|CF297842
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88372697|gb|CI612625.1|CI612625
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88405121|gb|CI685572.1|CI685572
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88335296|gb|CI650261.1|CI650261
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88593776|gb|CI713730.1|CI713730
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88672115|gb|CI726231.1|CI726231
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|58608520|gb|CK036553.1|CK036553
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88674467|gb|CI728580.1|CI728580
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88454252|gb|CI567857.1|CI567857
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|29657961|gb|CB654236.1|CB654236
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACCAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88670462|gb|CI724578.1|CI724578
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88421062|gb|CI566903.1|CI566903
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88412762|gb|CI576026.1|CI576026
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88331460|gb|CI675795.1|CI675795
EST:     CAGATCTTCAAGACCACCACCGGCACCCCCCTTCCTCTTCCCCANCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: CAGATCTTCAAGACCACCACCGGCACCCCC-TTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88575471|gb|CI669616.1|CI669616
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88827365|gb|CI777930.1|CI777930
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88668397|gb|CI721959.1|CI721959
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|33797630|gb|CF324674.1|CF324674
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88370080|gb|CI585085.1|CI585085
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88827354|gb|CI777919.1|CI777919
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88571667|gb|CI663040.1|CI663040
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|13420595|gb|AU174685.1|AU174685
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|29660238|gb|CB656513.1|CB656513
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88400944|gb|CI684918.1|CI684918
EST:     CAGATCTTCAAGAACCACCAC-GGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: CAGATCTTCAAGA-CCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88672213|gb|CI726329.1|CI726329
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|29644601|gb|CB649608.1|CB649608
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|29688813|gb|CB685088.1|CB685088
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|29615925|gb|CB620937.1|CB620937
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCTCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|4714639|gb|AU055756.1|AU055756
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGGAC
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGG-AC
EST: gi|88690549|gb|CI734628.1|CI734628
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|29638362|gb|CB643371.1|CB643371
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88673721|gb|CI727834.1|CI727834
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|58607598|gb|CK035631.1|CK035631
EST:     CTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: CTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|29675972|gb|CB672247.1|CB672247
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88426441|gb|CI576683.1|CI576683
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88436428|gb|CI691143.1|CI691143
EST:     GCAGATCTTCAAGAACACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|11564952|gb|AU165588.1|AU165588
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88576971|gb|CI673517.1|CI673517
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88581422|gb|CI698408.1|CI698408
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|29678036|gb|CB674311.1|CB674311
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88340971|gb|CI638527.1|CI638527
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88904352|gb|CI711660.1|CI711660
EST:     GCAGATCTTCAAGAACACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|38471361|gb|CF955492.1|CF955492
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88738337|gb|CI761845.1|CI761845
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|33664331|gb|CF295298.1|CF295298
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|29638669|gb|CB643678.1|CB643678
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|29678170|gb|CB674445.1|CB674445
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88391938|gb|CI683757.1|CI683757
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88444649|gb|CI694883.1|CI694883
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|29643551|gb|CB648558.1|CB648558
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88338623|gb|CI644080.1|CI644080
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88688525|gb|CI732101.1|CI732101
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|29679264|gb|CB675539.1|CB675539
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88691411|gb|CI733489.1|CI733489
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|29668635|gb|CB664910.1|CB664910
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|29664278|gb|CB660553.1|CB660553
EST:     GCACATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACCAACACGCTGTCGCCGGGGGATA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|86894091|gb|CI306055.1|CI306055
EST:     TTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: TTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88343122|gb|CI641648.1|CI641648
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88973668|gb|CI718096.1|CI718096
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88436461|gb|CI691178.1|CI691178
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88329058|gb|CI658713.1|CI658713
EST:     GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
EST: gi|88416944|gb|CI573659.1|CI573659
EST:     GCAGATCTTCAAGACCACCACCGGCACCCC-TTCCTCTTCCCCACCACCG                         GGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA
genomic: GCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 75 (downstream exon)
Score: 44

CGCTCGCCGGCGGTGCCCGCCCTCACCAAGACCCTCCTCGAGGACGTCAAGCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaac ... ttgcttgcagGGACGGGGGCGTGGGAGAGCGCGCTGACGAACACGCTGTCGCCGGGGGACAAGATCGTGTCGTTCCTGATCGGGCAGTTCAGCCTGCTGTGGATCGACCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCTCGCCGGCGGTGCCCGCCCTCACCAAGACCCTCCTCGAGGACGTCAAGCAGATCTTCAAGACCACCACCGGCACCCCCTTCCTCTTCCCCACCACCGgtaacccaaccaacctacctacctagcttcatcgatcgaccacgtccatagctaagggttttaactggctaacccgcaaacccgcttacaggtcaataaa

- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT