Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCACACCTGTAGATAAAGGGGCACTCTACTATGAGTTTCAGTACAACACAAGATCGGTGAAACCGACAATTCTTCATTTCCAGgtgagagctgtgccttctggagtcgtaattttgagttcttaaacattagaaactactatgtattaggcgacatatccaatacattccaaggtcaaaagat...

Basic information

species Oryza sativa
transcript LOC_Os08g38880.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g38880.6 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G113726_T01 (Zea mays), 5'ss of exon 3
GTATGCACACCTGTAGATAAAGGGGCACTCTACTATGAGTTTCAGTACAACACAAGATCGGTGAAACCGACAATTCTTCATTTCCAGgtgagagctgtgccttctggagtcgtaattttgagttcttaa---acattagaaact-actatgtattaggcgacatatccaatacattccaaggtcaaaagat
| |||||  |||| ||| |||||   ||||||||| ||||||||| ||| ||| || |||||||||||||| || | ||||||||||| |||   || |  ||| |   || |  ||  || |  ||     || |    |  | | | |  ||   || |   | ||  | ||| | |  ||  |||   
GAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAGgcgagccatg-gttttcagtgttccttgttccgaatgtttgttttacttggttagttcattctacatacagccagccaccct-tccatgcaaccgtgcaaac--

upper sequence: LOC_Os08g38880.6 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv19s0015g01750.t01 (Vitis vinifera), 5'ss of exon 3
GTATGCACACCTGTAGATAAAGGGGCACTCTACTATGAGTTTCAGTACAACACAAGATCGGTGAAACCGACAATTCTTCATTTCCAGgtgagagctgtgccttctggagtcgtaattttgagttcttaaacattagaaactactatgtattaggcgacatatccaatacattccaaggtcaaaa--gat-
| ||||| |  |    | ||||||| | | |  ||||||||  |  ||||  ||||||| |||||| | ||||||||||||||||||||  || ||     ||   |  || || |      ||  |||   ||      | |||| | ||     |||| |    | | ||      |   ||  ||  
GAATGCAAAGTTACCAAGAAAGGGGGATTGTTTTATGAGTTCAAACACAATGCAAGATCTGTGAAATCAACAATTCTTCATTTCCAGgtt-gatctccaagttt--gcatcatactacctgtttgctaacttttttttttttctatttttttaaaaacattttttcttccttttgctctttgaattgacc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29640492|gb|CB645501.1|CB645501
EST:     AGTTTCAGTACAACACAAGATCGGTGAAACCGACAATTCTTCATTTCCAG                         TTGAGAAATTTAGTATGGGCAACTACTAGACATGATGTGTATCTTCTATCA
genomic: AGTTTCAGTACAACACAAGATCGGTGAAACCGACAATTCTTCATTTCCAGgtgagagctg ... tattttgcagTTGAGAAATTTAGTATGGGCAACTACTAGACATGATGTGTATCTTCTATCA