Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCACAGCCGACGACCTCTTCCCGCTCTTCGACCGCTACGGCAAGGTCGTCGACGTCTTCATCCCGAGGGATCGGAGgtgaggagccgctttttttgggtggggtgtttgttctgctcgttgttttgtctggatgtttttgctcaaaattttgttgccgctattaag

Basic information

species Oryza sativa
transcript LOC_Os08g37960.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g37960.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G110143_T03 (Zea mays), 5'ss of exon 2
GTACCACAGCCGACGACCTCTTCCCGCTCTTCGACCGCTACGGCAAGGTCGTCGACGTCTTCATCCCGAGGGATCGGAGgtgaggagccgctttttttgggtggggtgtttgttctgctcgttgttttgtctggatgtttttgctcaaaattttgttgccgctattaag
| ||||| ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||| || |||| ||| | || |||   |    |||  | | | |  | |   |||||  ||  | |   ||||         | |  |           
GAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCGTCGACGTCTTCATCCCGAGGGACCGCAGgtcaggcgtcggtttgaattctcgggccggt-gcttcgatgactgtttcctcacgcttcgtttgtcggtgtcctcgcag-----------

upper sequence: LOC_Os08g37960.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G016296_T06 (Zea mays), 5'ss of exon 2
GTACCACAGCCGACGACCTCTTCCCGCTCTTCGACCGCTACGGCAAGGTCGTCGACGTCTTCATCCCGAGGGATCGGAGgtgaggagccgctttttttgggtggggtgtttgttctgctcgttgttttgtctggatgtttttgctcaaaattttgttgccgctattaag
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||| | |  |||   |    |||  | | |||| | | | |||||  || || | | || | ||      | |  |           
GCACCACGGCCGACGACCTCTTCCCGCTCTTCGAGCGCTACGGCAAGGTCGTCGACGTCTTCATCCCGAGGGACCGGAGgtcaggcgtccgtttcaatttccgggccggtggttc-gatggctgtttcctcaggttttgttcg-tcggtggctcgcag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88726297|gb|CI749952.1|CI749952
EST:     TTCGACCGCTACGGCAAGGTCGTCGACGTCTTCATCCCGAGGGATCGGAG                         GACTGGGGACTCGAGGGGATTCGCGTTCGTGCGCTACAAGTACGCTGAAGA
genomic: TTCGACCGCTACGGCAAGGTCGTCGACGTCTTCATCCCGAGGGATCGGAGgtgaggagcc ... cgctattaagGACTGGGGACTCGAGGGGATTCGCGTTCGTGCGCTACAAGTACGCTGAAGA
EST: gi|33794171|gb|CF322976.1|CF322976
EST:     TTCGACCGCTACGGCAAGGTCGTCGACGTCTTCATCCCGAGGGATCGGAG                         GACTGGGGACTCGAGGGGATTCGCGTTCGTGCGCTACAAGTACGCTGAAGA
genomic: TTCGACCGCTACGGCAAGGTCGTCGACGTCTTCATCCCGAGGGATCGGAGgtgaggagcc ... cgctattaagGACTGGGGACTCGAGGGGATTCGCGTTCGTGCGCTACAAGTACGCTGAAGA