1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGAAAAGTGAAGATTGCAGAGCATAAGCTTACAGGGCACAGAGTTGCTATAAAGATCCTGAACCGTCGCCAAATGAGAAATATGGAAATGGAGGAGAAAGgtaccttccttttataaagagaccactttaatcaatctattatcttctgtgttcatgatcatatgttacctgcttcctatagtggtctgatatgtgaact...
species | Oryza sativa |
transcript | LOC_Os08g37800.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAAGATCCTGAACCGTCGCCAAATGAGAAATATGGAAATGGAGGAGAAAG CAAAGAGAGAAATCAAGATATTGAGGTTGTTCATTCATCCCCATATCATTCEST: gi|117217399|gb|CT861615.1|CT861615
genomic: AAAGATCCTGAACCGTCGCCAAATGAGAAATATGGAAATGGAGGAGAAAGgtaccttcct ... ttgtttacagCAAAGAGAGAAATCAAGATATTGAGGTTGTTCATTCATCCCCATATCATTC
EST: AAAGATCCTGAACCGTCGCCAAATGAGAAATATGGAAATGGAGGAGAAAG CAAAGAGAGAAATCAAGATATTGAGGTTGTTCATTCATCCCCATATCATTCEST: gi|29635717|gb|CB640726.1|CB640726
genomic: AAAGATCCTGAACCGTCGCCAAATGAGAAATATGGAAATGGAGGAGAAAGgtaccttcct ... ttgtttacagCAAAGAGAGAAATCAAGATATTGAGGTTGTTCATTCATCCCCATATCATTC
EST: AAAGATCCTGAACCGTCGCCAAATGAGAAATATGGAAATGGAGGAGAAAG CAAAGAGAGAAATCAAGATATTGAGGTTGTTCATTCATCCCCATATCATTCEST: gi|88398509|gb|CI595910.1|CI595910
genomic: AAAGATCCTGAACCGTCGCCAAATGAGAAATATGGAAATGGAGGAGAAAGgtaccttcct ... ttgtttacagCAAAGAGAGAAATCAAGATATTGAGGTTGTTCATTCATCCCCATATCATTC
EST: AAAGATCCTGAACCGTCGCCAAATGAGAAATATGGAAATGGAGGAGAAAG CAAAGAGAGAAATCEST: gi|29624484|gb|CB629495.1|CB629495
genomic: AAAGATCCTGAACCGTCGCCAAATGAGAAATATGGAAATGGAGGAGAAAGgtaccttcct ... ttgtttacagCAAAGAGAGAAATC
EST: AAAGATCCTGAACCGTCGCCAAATGAGAAATATGGAAATGGAGGAGAAAG CAAAGAGAGAAATCAAGATATTGAGGTTGTTCATTCATCCCCATATCATTCEST: gi|58668090|gb|CK056776.1|CK056776
genomic: AAAGATCCTGAACCGTCGCCAAATGAGAAATATGGAAATGGAGGAGAAAGgtaccttcct ... ttgtttacagCAAAGAGAGAAATCAAGATATTGAGGTTGTTCATTCATCCCCATATCATTC
EST: AAAGATCCTGAACCGTCGCCAAATGAGAAATATGGAAATGGAGGAGAAAG CAAAGAGAGAAATCAAGATATTGAGGTTGTTCATTCATCCCCATATCATTC
genomic: AAAGATCCTGAACCGTCGCCAAATGAGAAATATGGAAATGGAGGAGAAAGgtaccttcct ... ttgtttacagCAAAGAGAGAAATCAAGATATTGAGGTTGTTCATTCATCCCCATATCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAAGTGAAGATTGCAGAGCATAAGCTTACAGGGCACAGAGTTGCTATAAAGATCCTGAACCGTCGCCAAATGAGAAATATGGAAATGGAGGAGAAAGgtaccttccttttataaagagaccactttaatcaatctattatcttctgtgttcatgatcatatgttacctgcttcctatagtggtctgatatgtgaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA