Sequence
atgc intronic sequence ATGC exonic sequenceGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGgtacacacttgctccatgatttgtttcttcgcggcggtgtttaaatcttgccctatagcatttgtctaaatgagcaaacttagagctacgatactcctaa...
Basic information
species | Oryza sativa |
transcript | LOC_Os08g37480.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os08g37480.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G153766_T01 (Zea mays), 5'ss of exon 2
GTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGgtacacacttgctccatgatt--tgtttcttcgcgg---cggtgtttaaatcttgccctatagcatttgtctaaatgagcaaacttagagctacgatactcctaa
|||||||| ||||| ||||||||| |||||||||||||||||||||| ||||||| | ||||||||||| || | ||| || | | || |||| ||| | ||| || | | | | || | | || ||| || |
GTCAACGATCCGCCAGTGCGCAACTCGCAGGAGGCCTTCCAGATGGAGATGCGCGCCGCCCGCATGgtatggacctactcgctgcccaccgatcgttagcggatttggttctgaaactgtgtttgaatcagacatccctagttagttatttcctagatacaatgat-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5455511|gb|AU075677.1|AU075677EST: TGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATG GTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACA
genomic: TGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGgtacacactt ... tgcttttcagGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGgtacacacttgctccatgatttgtttcttcgcggcggtgtttaaatcttgccctatagcatttgtctaaatgagcaaacttagagctacgatactcctaa
- - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - GATGGA