1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATGTATGCATGGATTGCAGCAAATTATGCGCTGGGTACCCTAGGCGATGACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAGgtttcatgtatcgttttcacacgaatgaattgaacttcatgcaatgaaagtttgtcaggatgtcttattattgtaccctttttgttgaatag
species | Oryza sativa |
transcript | LOC_Os08g33850.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAA GTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGGTCTCTCATACTCTGEST: gi|58592981|gb|CF991289.1|CF991289
genomic: ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAGgtttcatgta ... tgttgaatagGTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTG
EST: ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAG GTAACTTACGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTGEST: gi|58691243|gb|CK079930.1|CK079930
genomic: ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAGgtttcatgta ... tgttgaatagGTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTG
EST: ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAG GTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTGEST: gi|58691215|gb|CK079902.1|CK079902
genomic: ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAGgtttcatgta ... tgttgaatagGTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTG
EST: ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAG GTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTG
genomic: ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAGgtttcatgta ... tgttgaatagGTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTATGCATGGATTGCAGCAAATTATGCGCTGGGTACCCTAGGCGATGACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAGgtttcatgtatcgttttcacacgaatgaattgaacttcatgcaatgaaagtttgtcaggatgtcttattattgtaccctttttgttgaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT