1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTCGGCCTGTGGACAGATTTGGTTTCATTAAGCCAGAACAGGGTACCTCTCCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAGgtatgtaatgccttattggtggtctctttgtatataccctgataattgtttgtttagatgattagctggaaacagtaaatcttctagagaagctgttttc...
species | Oryza sativa |
transcript | LOC_Os08g31840.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAG GGACGGAAGGAGGATNNNNNNNTGGAGGAAGATGATAGGTGTTGGTGGTAGEST: gi|29666045|gb|CB662320.1|CB662320
genomic: CCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAGgtatgtaatg ... gtaaccatagGGACGGAAGGAGGATAAAAAAATGGAGGAAGATGATAGGTGTTGGTGGTAG
EST: CCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAG GGACGGAAGGAGGATNNNNNNNTGGAGGAAGATGATAGGTGTTGGTGGTAGEST: gi|218502114|gb|FG959502.1|FG959502
genomic: CCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAGgtatgtaatg ... gtaaccatagGGACGGAAGGAGGATAAAAAAATGGAGGAAGATGATAGGTGTTGGTGGTAG
EST: CCTGATGGAATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAG GGACGGAAGGAGGATNNNNNNNTGGAGGAAGATGATAGGTGTTGGTGGTAG
genomic: CCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAGgtatgtaatg ... gtaaccatagGGACGGAAGGAGGATAAAAAAATGGAGGAAGATGATAGGTGTTGGTGGTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGGCCTGTGGACAGATTTGGTTTCATTAAGCCAGAACAGGGTACCTCTCCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAGgtatgtaatgccttattggtggtctctttgtatataccctgataattgtttgtttagatgattagctggaaacagtaaatcttctagagaagctgttttc
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