1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AATAAACATTACAACAGTTCAATTTGCTGTTGGTACTGTCGTTGCTTTGTTCATGTGGATCACTGGTATCCTTAGGAGACCAAAGATTTCTGGTGCACAGgtagatctttgatattgtttgacacactttcattgtttaaatgggttgtattaacaaggagtatctgttgctcttgtgttttccttttcag
species | Oryza sativa |
transcript | LOC_Os08g25624.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCATGTGGATCACTGGTATCCTTAGGAGACCAAAGATTTCTGGTGCACAG CTCTTTGCCATCCTTCCTCTAGCTGTGGTCCATACTATGGGCAATCTTTTCEST: gi|58610772|gb|CK038484.1|CK038484
genomic: TCATGTGGATCACTGGTATCCTTAGGAGACCAAAGATTTCTGGTGCACAGgtagatcttt ... tccttttcagCTCTTTGCCATCCTTCCTCTAGCTGTGGTCCATACTATGGGCAATCTTTTC
EST: GTATCCTTAGGAGA-CAAAGATTTCTGGTGCACAG CTCTTTGCCATCCTTCCTCGTAGCTGTGGTCCATACTATGGGCAATCTTTT
genomic: GTATCCTTAGGAGACCAAAGATTTCTGGTGCACAGgtagatcttt ... tccttttcagCTCTTTGCCATCCTTCCTC-TAGCTGTGGTCCATACTATGGGCAATCTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATAAACATTACAACAGTTCAATTTGCTGTTGGTACTGTCGTTGCTTTGTTCATGTGGATCACTGGTATCCTTAGGAGACCAAAGATTTCTGGTGCACAGgtagatctttgatattgtttgacacactttcattgtttaaatgggttgtattaacaaggagtatctgttgctcttgtgttttccttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA