1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGGGAACTGACTGTTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAGgtgatgaatttgatatccagtggctagcttctatacatttatactagaactccacacattgtccaccttgctgatgcatctatacaatataagtatttgt...
species | Oryza sativa |
transcript | LOC_Os08g10410.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAG GATGATAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAGEST: gi|88307798|gb|CI644838.1|CI644838
genomic: TTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAGgtgatgaatt ... atctccacagGATGATAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAG
EST: TTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAG GATGATAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAGEST: gi|88336875|gb|CI626955.1|CI626955
genomic: TTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAGgtgatgaatt ... atctccacagGATGATAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAG
EST: TTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAG GATGATAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAGEST: gi|218479983|gb|FG957518.1|FG957518
genomic: TTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAGgtgatgaatt ... atctccacagGATGATAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAG
EST: ATTGCCAATTTGCAAGTGGAACTACAGGACAGAAAG GATGATAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAGEST: gi|88372600|gb|CI610923.1|CI610923
genomic: ATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAGgtgatgaatt ... atctccacagGATGATAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAG
EST: TTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAG GATGATAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAGEST: gi|88313765|gb|CI597396.1|CI597396
genomic: TTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAGgtgatgaatt ... atctccacagGATGATAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAG
EST: TTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAG GATGATAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAGEST: gi|88344713|gb|CI624364.1|CI624364
genomic: TTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAGgtgatgaatt ... atctccacagGATGATAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAG
EST: TTGTACAGAGGAACATTGCCAATTTGGAAGTGGAACTACAGGGCAGAAAG GATGATAAAAATATTGGTCATCTGACTCACGTTAGTGAGATGGAGAAGAAGEST: gi|5004222|gb|AU069371.1|AU069371
genomic: TTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAGgtgatgaatt ... atctccacagGATGATAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAG
EST: TTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAG GATGATAAAAATATTGCTCATCTGACTCACGTTAGT-AGATTGGAGAAGAA
genomic: TTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAGgtgatgaatt ... atctccacagGATGATAAAAATATTGCTCATCTGACTCACGTTAGTGAGAT-GGAGAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCTCAGACAAAAGCGATGATCTAGTGAGGGTTTTGAGGGAACTGACTGTTGTACAGAGGAACATTGCCAATTTGCAAGTGGAACTACAGGGCAGAAAGgtgatgaatttgatatccagtggctagcttctatacatttatactagaactccacacattgtccaccttgctgatgcatctatacaatataagtatttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccacac