1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctcacctcttctcctttccttttcttttctttttgtcgatatcgatgtatctgtgtgctgtttgatggattgttgtagctgttttgcgtgaata...
species | Oryza sativa |
transcript | LOC_Os08g09240.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|55436298|gb|CV731287.1|CV731287
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGATTCAGTCNGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|33659136|gb|CF281749.1|CF281749
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: TTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|58590250|gb|CF988558.1|CF988558
genomic: TTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|218487512|gb|FG953689.1|FG953689
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|25802781|gb|CA758742.1|CA758742
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|88721866|gb|CI743378.1|CI743378
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|88974162|gb|CI002783.1|CI002783
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: AGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|88428393|gb|CI564861.1|CI564861
genomic: AGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCATTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAAAAGTATCCCGATAGAAEST: gi|58695129|gb|CK083816.1|CK083816
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|88963125|gb|CI026798.1|CI026798
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|33671347|gb|CF299586.1|CF299586
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCNATCAGGGAGAAGTATCCCGATAGAEST: gi|58593892|gb|CF992200.1|CF992200
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGC-ATCAGGGAGAAGTATCCCGATAGA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCA-CCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|55431390|gb|CV728708.1|CV728708
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCATTTGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|218486561|gb|FG954049.1|FG954049
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|163926759|gb|EG715047.1|EG715047
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|33682438|gb|CF310677.1|CF310677
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|87012764|gb|CI295208.1|CI295208
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|58586677|gb|CF984985.1|CF984985
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: GGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAGGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|88424094|gb|CI689796.1|CI689796
genomic: GGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|58599898|gb|CK010426.1|CK010426
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGGTAGTAGTGAAGAAAGCAAGGCAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctcacctcttctcctttccttttcttttctttttgtcgatatcgatgtatctgtgtgctgtttgatggattgttgtagctgttttgcgtgaata
- - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA