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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGGCGGCGAGGCGGAGTCCTTCTTCCGCGCCGCGCCGCCGCTCCGCGACCAGGACCGCGTCGCCGGGGACCTCGCCGACTTCGTCGCCCGCCACTCCGgcaagtccctcctcccctcgcctcctccttccctctcctccgatctcatctccttcgatgcgtcgcgtggtgggtgagtttgctgatctcgatcgtgtttggtggtgggtag

Basic information

species Oryza sativa
transcript LOC_Os08g07880.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g07880.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G008209_T03 (Zea mays), 5'ss of exon 1
GGCGGCGGCGAGGCGGAGTCCTTCTTCCGCGCCGCGCCGCCGCTCCGCGACCAGGACCGCGTCGCCGGGGACCTCGCCGACTTCGTCGCCCGCCACTCCGgcaagtccctcctcccctcgcctcctccttccctctcctccgatctcatctcc-ttcgatgcgtcgcgtggtgggtgagtttgctgatctcgatcgtgtttggtggtg-ggtag-----------------------------
   |  |  | ||||||| ||||||||||||| |||||||||||||| ||||  |||||  ||||||    ||||||||| ||| ||||||||||||||| |  |    |  |||||   ||||| | |  |  |  | | | |||||||||  | ||   |   ||  ||||| |||        | |   | |  | ||  ||  | ||  |                             
---GAGGAGGCGGCGGAGGCCTTCTTCCGCGCGGCGCCGCCGCTCCGTGACCGCGACCGTCTCGCCGCCAGCCTCGCCGATTTCCTCGCCCGCCACTCCGCCG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88664974|gb|CI706012.1|CI706012
EST:     CCAGGACCGCGTCGCCGGGGACCTCGCCGACTTCGTCGCCCGCCACTCCG                         GGAGCGGAGGAGGGGGGAGGCTCGCCGGGGTGGTCTGCGTCACCTCCGGC
genomic: CCAGGACCGCGTCGCCGGGGACCTCGCCGACTTCGTCGCCCGCCACTCCGgcaagtccct ... tggtgggtagGGAGCGGAGGAGGGGGGAGGCTCGCCGGGGTGGTCTGCGTCACCTCCGGC