1 5' 3' | 2 5' 3' | 3 5' 3' |
GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctgccaaccctactgtttcttttcaccaattctcgccttagtttcgctatagttcatgagcatgtgtaggttttatgcatcgtaaacagcact...
species | Oryza sativa |
transcript | LOC_Os08g06040.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88471627|gb|CI408898.1|CI408898
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: GAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88992083|gb|CI035221.1|CI035221
genomic: GAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88392096|gb|CI683927.1|CI683927
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|10794904|gb|AU108870.1|AU108870
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|86253316|gb|CI058241.1|CI058241
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88976264|gb|CI024481.1|CI024481
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|287280|gb|D16082.1|D16082
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88271756|gb|CI387809.1|CI387809
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: TGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|86418011|gb|CI032220.1|CI032220
genomic: TGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|15847674|gb|BI795838.1|BI795838
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88384323|gb|CI551249.1|CI551249
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88490488|gb|CI427760.1|CI427760
genomic: AGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: CCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88506594|gb|CI434100.1|CI434100
genomic: CCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: GGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|58674240|gb|CK062926.1|CK062926
genomic: GGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88320229|gb|CI520773.1|CI520773
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|3090473|gb|C93460.1|C93460
genomic: AAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGTGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88381733|gb|CI682405.1|CI682405
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88212849|gb|CI210700.1|CI210700
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAGGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|427534|gb|D23601.1|D23601
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|86423139|gb|CI060712.1|CI060712
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88511547|gb|CI439053.1|CI439053
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88962927|gb|CI025413.1|CI025413
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|11565085|gb|AU165721.1|AU165721
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|86253281|gb|CI058206.1|CI058206
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88208339|gb|CI208188.1|CI208188
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|86416360|gb|CI030371.1|CI030371
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|89170363|gb|CI039640.1|CI039640
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88345129|gb|CI628383.1|CI628383
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|89198979|gb|CI253053.1|CI253053
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|86531179|gb|CI171385.1|CI171385
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88263329|gb|CI367103.1|CI367103
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: CCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|4879891|gb|AU064190.1|AU064190
genomic: CCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|9788908|gb|BE530918.1|BE530918
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|88413236|gb|CI523797.1|CI523797
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: CGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATEST: gi|4879856|gb|AU064155.1|AU064155
genomic: CGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
EST: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGA ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
genomic: AGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctg ... taaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGAGGCTTGTGTACCAGTACACCAAGAAGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgctgccaaccctactgtttcttttcaccaattctcgccttagtttcgctatagttcatgagcatgtgtaggttttatgcatcgtaaacagcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaccc