Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTCAAAAGAGATCAACTTCCCCTATCCTGTGGCATTAACTCTGCTGCACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAGATCTTCAAGgtacttattcatgtgcattaaaaaaaaagctctctgccaataatccctgcaaaaaaaaaaaaaagaaatccctaatctttgtaataattgaaattcttcatggttccaacagcctttttggcactcagtacatccataaacttattatttccctttattttgatgatatttcccag

Basic information

species Oryza sativa
transcript LOC_Os08g04110.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g04110.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G022793_T01 (Zea mays), 5'ss of exon 2
ATCCTCAAAAGAGATCAACTTCCCCTATCCTGTGGCATTAACTCTGCTGCACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAGATCTTCAAGgtacttattcatgtgcattaaaaaaaaagctctctgccaataatccctgcaaaaaaaaaaaaaagaaatccctaatctttgtaataattgaaattcttcatggttccaacagcctttttggcactcagtacatccataaacttattatttccctttattttgatgatatttcccag
|||||| |||||||||||||| |||||||| |||||| | ||||||||||||||||| ||||| |||||||||||||| ||||| |||||  | ||||||||| ||| |||||||||||| |     |   | | |       | | ||| | |  |  |   | |  |     | |   || ||||| |   |||    || | ||    |   || ||    |   |     || | ||||| | ||||| | ||| |||||||||||||||||
ATCCTCCAAAGAGATCAACTTTCCCTATCCCGTGGCACTGACTCTGCTGCACATGGTCTTCTCCTCTGTAGTGTGCTTTGCAATCACAAAAGTTTTCAAGgtaattactcatgtgcattatagcggga---cacggtt-----tgcttgctatatcactagttataggtgtactacccaagtcataat-gtggttccatttgttgccttggggtattctg----tagatctgggcacacacttactctttccttctatattgatgatatttcccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58598476|gb|CK009004.1|CK009004
EST:     ACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAGATCTTCAAG                         ATTGTAAAGATTGAGGAGGGAATGACTACCGATAT
genomic: ACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAGATCTTCAAGgtacttattc ... tatttcccagATTGTAAAGATTGAGGAGGGAATGACTACCGATAT