1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTTGACCCATCCTGAGCTATATGAAGACATTGGCATCAGGCCACCCAAGGGAGTCATATTATACGGAGAACCTGGAACAGGGAAGACACTACTTGCCAAGgttagtgttctggtttgcgtattgggagtcaatatagcttatggcagtaatgcaggcttcagccctccatttatggcttgtaataattaagcaaagcattgcactatttgtcattctgtacctctcagttctctgaccactgattacttgcattgttgttgcag
species | Oryza sativa |
transcript | LOC_Os07g49150.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGTCATATTATACGGAGAACCTGGAACAGGGAAGACACTACTTGCCAAG GGTGTTGCTAACTCCACATCCGCAATTTTCTTGCGTGTTGTTGGAAGTGAGEST: gi|10931233|gb|AU161507.1|AU161507
genomic: GAGTCATATTATACGGAGAACCTGGAACAGGGAAGACACTACTTGCCAAGgttagtgttc ... gttgttgcagGCTGTTGCTAACTCCACATCCGCAACTTTCTTGCGTGTTGTTGGAAGTGAG
EST: GAGTCATATTATACGGAGAACCTGGAACAGGGAAGACACTACTTTCCAAG GCTGTTGCTAACTEST: gi|300216308|gb|HO088093.1|HO088093
genomic: GAGTCATATTATACGGAGAACCTGGAACAGGGAAGACACTACTTGCCAAGgttagtgttc ... gttgttgcagGCTGTTGCTAACT
EST: GAGTCATATTATACGGAGAACCTGGAACAGGGAAGACACTACTTGCCAAG GCTGTTGCTAACTCCACATCTGCAACTTTCTTGCGTGTTGTTGGAAGTGAGEST: gi|427421|gb|D23487.1|D23487
genomic: GAGTCATATTATACGGAGAACCTGGAACAGGGAAGACACTACTTGCCAAGgttagtgttc ... gttgttgcagGCTGTTGCTAACTCCACATCCGCAACTTTCTTGCGTGTTGTTGGAAGTGAG
EST: GAGTCATATTATACGGAGAACCTGGAACAGCNAAGACACTACTTGCCAAG GCTGTTGCTAACTCCACATCCGCAACTTTCTTGCGTGTTGTTGGAAGTGAGEST: gi|66915039|gb|CX101887.1|CX101887
genomic: GAGTCATATTATACGGAGAACCTGGAACAGGGAAGACACTACTTGCCAAGgttagtgttc ... gttgttgcagGCTGTTGCTAACTCCACATCCGCAACTTTCTTGCGTGTTGTTGGAAGTGAG
EST: GGAGAA-CTGGAACAGGGAAGACACTACTTGCCAAG GCTGTTGCTAACTCCACATCCGCAACTTTCTTGCGTGTTGTTGGAAGTGAGEST: gi|30229533|gb|CB967424.1|CB967424
genomic: GGAGAACCTGGAACAGGGAAGACACTACTTGCCAAGgttagtgttc ... gttgttgcagGCTGTTGCTAACTCCACATCCGCAACTTTCTTGCGTGTTGTTGGAAGTGAG
EST: GAGTCATATTATACGGAGAACCTGGAACAGGGAAGACACTACTTGCCAAG GCTGTTGCTAACTCCACATCTGCAACTTTCTTGCGTGTTGTAGGAAGTGAGEST: gi|117222452|gb|CT845862.1|CT845862
genomic: GAGTCATATTATACGGAGAACCTGGAACAGGGAAGACACTACTTGCCAAGgttagtgttc ... gttgttgcagGCTGTTGCTAACTCCACATCCGCAACTTTCTTGCGTGTTGTTGGAAGTGAG
EST: GAGTCATATTATACGGAGAACCTGGAACAGGGAAGACACTACTTGCCAAG GCTGTTGCTAACTCCACATCTGCAACEST: gi|27577327|gb|CB000022.1|CB000022
genomic: GAGTCATATTATACGGAGAACCTGGAACAGGGAAGACACTACTTGCCAAGgttagtgttc ... gttgttgcagGCTGTTGCTAACTCCACATCCGCAAC
EST: GAGTCATATTATACGGAGAACCTGGAACAGGGAAGACACTACTTGCCAAG GCTGTTGCTAACTCCACATCCGCAACTTTCTTGCGTGTTGTTGGAAGTGAG
genomic: GAGTCATATTATACGGAGAACCTGGAACAGGGAAGACACTACTTGCCAAGgttagtgttc ... gttgttgcagGCTGTTGCTAACTCCACATCCGCAACTTTCTTGCGTGTTGTTGGAAGTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGACCCATCCTGAGCTATATGAAGACATTGGCATCAGGCCACCCAAGGGAGTCATATTATACGGAGAACCTGGAACAGGGAAGACACTACTTGCCAAGgttagtgttctggtttgcgtattgggagtcaatatagcttatggcagtaatgcaggcttcagccctccatttatggcttgtaataattaagcaaagcattgcactatttgtcattctgtacctctcagttctctgaccactgattacttgcattgttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA