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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGAGGCACTTGGCATTGTTGTTGGGATTGTCTACTTGGTCATTGCTATTCTATTTCAACATTTCAACTTCACAGCAGACTCTATGgtatgttgactagaagttactataattggcattcataaacgttgctttgtgacctgaaacatgtgttacaattactgtttttgacttccttgttgcag

Basic information

species Oryza sativa
transcript LOC_Os07g46640.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g46640.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G137707_T01 (Zea mays), 5'ss of exon 2
GCCTGAGGCACTTGGCATTGTTGTTGGGATTGTCTACTTGGTCATTGCTATTCTATTTCAACATTTCAACTTCACAGCAGACTCTATGgtatgttg--actagaagttactataattggcattcataaacgttgctttgtgacctgaaacatgtgttacaattactgtttttgacttccttgttgcag
|||||| ||||| ||  ||||||| |||||| |||||||||||||||||||| ||||||| || ||  |||   |  ||||||| || ||||| ||  || |  ||| | | |  ||  || | | ||||      || || |||||| ||| | | ||| |  || ||  || |||| || ||||||
GCCTGAAGCACTAGGTCTTGTTGTGGGGATTATCTACTTGGTCATTGCTATTATATTTCAGCAGTTTCACTATGCCCCAGACTCCATTgtatgctgtgaccaccagt-atttt--tttacacttacaaac----tgttatgtcctgaagcatatttaacagtggcttttgctgtcttcttt-ttgcag

upper sequence: LOC_Os07g46640.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G827205_T02 (Zea mays), 5'ss of exon 2
GCCTGAGGCACTTGGCATTGTTGTTGGGATTGTCTACTTGGTCATTGCTATTCTATTTCAACATTTCAACTTCACAGCAGACTCTATGgtatgt--tgactagaagt----------------------------------tactataattggc------------attcataaacgt--------tgctttgtgacctgaaacatgtgttacaattactgtttttgacttccttgttgcag
|||||||||||| ||| ||||||| ||||||||||| ||||||||||||||| ||||||| || ||  |||   |  ||||||| || |||||   |||| || |||                                  |  | || ||| |            ||||   ||||         ||  || || |||||||||||| | ||| ||  | || ||| |||| |||||||||
GCCTGAGGCACTAGGCCTTGTTGTGGGGATTGTCTATTTGGTCATTGCTATTATATTTCAGCAGTTTCACTATGCCCCAGACTCCATTgtatgcagtgacgagcagtattttttaacatttacaaactactccctccgttcttttttatttgtcgccggcgaaaaaattcgagaacggaggtagtatgtcttatgtcctgaaacatgtttcacagttgtttttgttgtcttc-ttgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38473384|gb|CF957516.1|CF957516
EST:     TGGTCATTGCTATTCTATTTCAACATTTCAACTTCACAGCAGACTCTATG                         TGGCTTGTTGAATACAACGCGGCACTAGCATCAGTCTGCTTTATGGTGCTT
genomic: TGGTCATTGCTATTCTATTTCAACATTTCAACTTCACAGCAGACTCTATGgtatgttgac ... cttgttgcagTGGCTTGTTGAATACAACGCGGCACTAGCATCAGTCTGCTTTATGGTGCTT