1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATGCTTGGATGGGAGCTTACCAGGGTATCACCTACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAGgtgagaaatacaccccaattcccatatatgtgaaccgagagataagtttgagcaaatggcactttgtggcactagagattgttgtatatcgttcaggctttagtagctgatggtgattcgtttggaattccag
species | Oryza sativa |
transcript | LOC_Os07g44070.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAG GGTGGAGGCTGGTGCAACGATGTTAAAAGEST: gi|58669941|gb|CK058627.1|CK058627
genomic: TACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAGgtgagaaata ... ggaattccagGGTGGAGGCTGGTGCAACGATGTTAAAAG
EST: TACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAG GGTGGAGGCTGGTGCAACGATGTTAAAAGCTGCGTGTTTCGCAAGAGCAGTEST: gi|88343238|gb|CI627198.1|CI627198
genomic: TACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAGgtgagaaata ... ggaattccagGGTGGAGGCTGGTGCAACGATGTTAAAAGCTGCGTGTTTCGCAAGAGCAGT
EST: TACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAG GGTGGAGGCTGGTGCAACGATGTTAAAAEST: gi|10931316|gb|AU161590.1|AU161590
genomic: TACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAGgtgagaaata ... ggaattccagGGTGGAGGCTGGTGCAACGATGTTAAAA
EST: TACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAG GGTGGAGGCTGGTGCAACGATGTTAAAAGCTGCGTGTTTCGCAAGAGCAGTEST: gi|88367213|gb|CI563977.1|CI563977
genomic: TACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAGgtgagaaata ... ggaattccagGGTGGAGGCTGGTGCAACGATGTTAAAAGCTGCGTGTTTCGCAAGAGCAGT
EST: TACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAG GGTGGAGGCTGGTGCAACGATGTTAAAAGCTGCGTGTTTCGCAAGAGCAGTEST: gi|58689727|gb|CK078414.1|CK078414
genomic: TACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAGgtgagaaata ... ggaattccagGGTGGAGGCTGGTGCAACGATGTTAAAAGCTGCGTGTTTCGCAAGAGCAGT
EST: TACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAG GGTGGAGGCTGGTGCAACGATGTTAAAAGCTGCGTGTTTCGCAAGAGCAGTEST: gi|5003056|gb|AU068165.1|AU068165
genomic: TACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAGgtgagaaata ... ggaattccagGGTGGAGGCTGGTGCAACGATGTTAAAAGCTGCGTGTTTCGCAAGAGCAGT
EST: TACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAG GGTGGAGGCTGGTGCAACGATGTTAAAAGCTGCGTGTTTCGCAAGAGCAGTEST: gi|58596473|gb|CK007001.1|CK007001
genomic: TACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAGgtgagaaata ... ggaattccagGGTGGAGGCTGGTGCAACGATGTTAAAAGCTGCGTGTTTCGCAAGAGCAGT
EST: ACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTTGGAG GGTGGAGGCTGGTGCAACGATGTTAAAAGCTGCGTGTTTCGCAAGAGCAG
genomic: ACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTT-GGAGgtgagaaata ... ggaattccagGGTGGAGGCTGGTGCAACGATGTTAAAAGCTGCGTGTTTCGCAAGAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGCTTGGATGGGAGCTTACCAGGGTATCACCTACACCGAGGGTTTGGATCAGGGGCAAACAGTTGGCTTGTCAATTTGGAGgtgagaaatacaccccaattcccatatatgtgaaccgagagataagtttgagcaaatggcactttgtggcactagagattgttgtatatcgttcaggctttagtagctgatggtgattcgtttggaattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG