1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGGgtaacgtccatgccgcgctgcactaaccttataagttgtttgtgtttcatatattgtattattgttgctatgtcggccgctcctggcgattgttcgcctg...
species | Oryza sativa |
transcript | LOC_Os07g43060.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGG AATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGEST: gi|55431292|gb|CV728660.1|CV728660
genomic: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGGgtaacgtcca ... ctgtgctcagAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAG
EST: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGG AATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGEST: gi|11610378|gb|AU166054.1|AU166054
genomic: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGGgtaacgtcca ... ctgtgctcagAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAG
EST: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGG AATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGEST: gi|88838475|gb|CI375023.1|CI375023
genomic: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGGgtaacgtcca ... ctgtgctcagAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAG
EST: GGATCACGACAACGT-GTCAACTGCACCACCCCCAAGTTCACAGG AATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGEST: gi|58686363|gb|CK075050.1|CK075050
genomic: GGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGGgtaacgtcca ... ctgtgctcagAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAG
EST: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGG AATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGEST: gi|88833830|gb|CI077311.1|CI077311
genomic: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGGgtaacgtcca ... ctgtgctcagAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAG
EST: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGG AATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGEST: gi|86423375|gb|CI060948.1|CI060948
genomic: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGGgtaacgtcca ... ctgtgctcagAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAG
EST: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGG AATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGEST: gi|8857385|gb|AU094703.1|AU094703
genomic: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGGgtaacgtcca ... ctgtgctcagAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAG
EST: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGG AATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGEST: gi|88212631|gb|CI212271.1|CI212271
genomic: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGGgtaacgtcca ... ctgtgctcagAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAG
EST: TCAACTGCACCACCCCCAACTTCACAGG AATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGEST: gi|163919996|gb|EG709802.1|EG709802
genomic: TCAACTGCACCACCCCCAACTTCACAGGgtaacgtcca ... ctgtgctcagAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAG
EST: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGG AATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTCGAGEST: gi|163928022|gb|EG709470.1|EG709470
genomic: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGGgtaacgtcca ... ctgtgctcagAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAG
EST: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGG AATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGEST: gi|87019382|gb|CI279892.1|CI279892
genomic: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGGgtaacgtcca ... ctgtgctcagAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAG
EST: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGG AATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGEST: gi|88976243|gb|CI024460.1|CI024460
genomic: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGGgtaacgtcca ... ctgtgctcagAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAG
EST: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGG AATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAG
genomic: GAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGGgtaacgtcca ... ctgtgctcagAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCGTCAACTGCACCACCCCCAACTTCACAGGgtaacgtccatgccgcgctgcactaaccttataagttgtttgtgtttcatatattgtattattgttgctatgtcggccgctcctggcgattgttcgcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cggccgc