1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGgtaagctgttcggtgttctgttcttctcagttggaccattttgtcggtgcctcggtgggggttgaatacttgaattcgcaattattggtttgttacctaccaactgtttaatctgtactgcaatgcag
species | Oryza sativa |
transcript | LOC_Os07g37740.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCG AATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTEST: gi|88357103|gb|CI615990.1|CI615990
genomic: GTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGgtaagctgtt ... tgcaatgcagAATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTT
EST: GTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCG AATCCACGGAATGTGCCEST: gi|88362315|gb|CI608706.1|CI608706
genomic: GTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGgtaagctgtt ... tgcaatgcagAATCCACGGAATGTGCC
EST: GTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCG AATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTEST: gi|7332504|gb|AU085850.1|AU085850
genomic: GTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGgtaagctgtt ... tgcaatgcagAATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTT
EST: GTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCG AATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTEST: gi|88359656|gb|CI622346.1|CI622346
genomic: GTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGgtaagctgtt ... tgcaatgcagAATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTT
EST: GTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCG AATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTEST: gi|88373329|gb|CI614665.1|CI614665
genomic: GTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGgtaagctgtt ... tgcaatgcagAATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTT
EST: GTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCG AATCCA-GGAATGEST: gi|88362933|gb|CI614289.1|CI614289
genomic: GTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGgtaagctgtt ... tgcaatgcagAATCCACGGAATG
EST: TAATGCTTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCG AATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGC
genomic: TAAGGCT-GGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGgtaagctgtt ... tgcaatgcagAATCCACGGAATGTGCCTTCTGTGTCGTCGAATTCGCGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACAAGCGCGTGGTAAGGCTGGAGGGCAGCCCAGCTATGGCGGCGGCGCGTTCTACATGCCGgtaagctgttcggtgttctgttcttctcagttggaccattttgtcggtgcctcggtgggggttgaatacttgaattcgcaattattggtttgttacctaccaactgtttaatctgtactgcaatgcag
- - - - - - - - - GCTGGA
- - - - - - - - - - TGGAGG