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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGGCAAAAAAGCAATTATGCTGAAATGGAACATGTCAGGGGGGAGTTGGATCATGCCAATCAAATTTTCGCCCAGCATCCTATATGGCCAGTCATCGgtacgatcaatttaattgtctttgtggaaacacttttctttgtactttcatatgttgaagtgtagtttgttttgtgtttgtgcag

Basic information

species Oryza sativa
transcript LOC_Os07g34640.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g34640.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G004880_T01 (Zea mays), 5'ss of exon 2
CATGGGCAAAAAAGCAATTATGCTGAAATGGAACATGTCAGGGGGGAGTTGGATCATGCCAATCAAATTTTCGCCCAGCATCCTATATGGCCAGTCATCGgtacgatcaatttaattgtctttgtggaaacacttttctttgtactttcatatgttgaagtgtagttt-gttttgtgtttgtgcag
 ||||| |  | |||||||||||||||||||| ||||| |||  |||  ||   ||||| ||||||||||||||||| ||||| || ||||||||||| ||||    ||| ||| |||| ||  || ||||  |||  ||  |  ||   | | |  ||   || |||  |  ||| ||  |||||
GATGGGTATCAGAGCAATTATGCTGAAATGGACCATGTGAGGCAGGAACTGCTCCATGCAAATCAAATTTTCGCCCAACATCCAATGTGGCCAGTCATTGgta-agccaagttagttgtattcatg-aaaccttttgtttgttgtttctttgtttaaaaacatactttcatactgttttcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29661236|gb|CB657511.1|CB657511
EST:     GGATCATGCCAATCAAATTTTCGCCCAGCATCCTATATGGCCAGTCATAG                         AAGTCACTGGAAAAGCTATAGAGGAAACAGCTGCTGTCGTTGTGAGGATAT
genomic: GGATCATGCCAATCAAATTTTCGCCCAGCATCCTATATGGCCAGTCATCGgtacgatcaa ... gtttgtgcagAAGTCACTGGAAAAGCTATAGAGGAAACAGCTGCTGTCGTTGTGAGGATAT
EST: gi|88249830|gb|CI249679.1|CI249679
EST:     GGATCATGCCAATCAAATTTTCGCCCAGCATCCTATATGGCCAGTCATCG                         AAGTCACTGGAAAAGCTATAGAGGAAACAGCTGCTGTCGTTGTGAGGATAT
genomic: GGATCATGCCAATCAAATTTTCGCCCAGCATCCTATATGGCCAGTCATCGgtacgatcaa ... gtttgtgcagAAGTCACTGGAAAAGCTATAGAGGAAACAGCTGCTGTCGTTGTGAGGATAT