1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTCGGCGAGCACTTCCCGGCGCCGGTCTACTTCTCCCTCCTCCCAATCATCGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTGgtgagtgagcaaacactctgcatctctctgtctctccacctgaaatcctggagatacttgcagcagatacaccagaaatatcctcactttttgattaaaa...
species | Oryza sativa |
transcript | LOC_Os07g33954.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTG GATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATATEST: gi|58681314|gb|CK070001.1|CK070001
genomic: CGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTGgtgagtgagc ... ttcgatgcagGATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATAT
EST: CGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTG GATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATATEST: gi|38479783|gb|CF963872.1|CF963872
genomic: CGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTGgtgagtgagc ... ttcgatgcagGATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATAT
EST: CGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTG GATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATATEST: gi|58677764|gb|CK066451.1|CK066451
genomic: CGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTGgtgagtgagc ... ttcgatgcagGATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATAT
EST: CGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTG GATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATATEST: gi|58687050|gb|CK075737.1|CK075737
genomic: CGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTGgtgagtgagc ... ttcgatgcagGATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATAT
EST: CGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTG GATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATATEST: gi|58598525|gb|CK009053.1|CK009053
genomic: CGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTGgtgagtgagc ... ttcgatgcagGATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATAT
EST: CGGCGGATGCGCCCTCGCCGCCATCAGCGAGCTCAATTTCAACATGATTG GATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATATEST: gi|218501784|gb|FG956611.1|FG956611
genomic: CGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTGgtgagtgagc ... ttcgatgcagGATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATAT
EST: TTCAACATGATTG GATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATATEST: gi|58677768|gb|CK066455.1|CK066455
genomic: TTCAACATGATTGgtgagtgagc ... ttcgatgcagGATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATAT
EST: CGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTG GATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATATEST: gi|27554106|gb|CA998006.1|CA998006
genomic: CGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTGgtgagtgagc ... ttcgatgcagGATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATAT
EST: CGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTG GATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATAT
genomic: CGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTGgtgagtgagc ... ttcgatgcagGATTCATGGGGGCGATGATCTCGAACCTGGCATTCGTGTTCCGGAACATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGGCGAGCACTTCCCGGCGCCGGTCTACTTCTCCCTCCTCCCAATCATCGGCGGATGCGCCCTCGCCGCCATCACCGAGCTCAATTTCAACATGATTGgtgagtgagcaaacactctgcatctctctgtctctccacctgaaatcctggagatacttgcagcagatacaccagaaatatcctcactttttgattaaaa
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