Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgcttcttctctctcgccccattacctctttgccctgtcaatttgttgcgattaggttgcaatctgtgattcgatcgatggtgtggtggtagat...

Basic information

species Oryza sativa
transcript LOC_Os07g32800.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38468908|gb|CF953039.1|CF953039
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|88325173|gb|CI646593.1|CI646593
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33676891|gb|CF305130.1|CF305130
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33805109|gb|CF328432.1|CF328432
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|27577219|gb|CA999913.1|CA999913
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33680432|gb|CF308671.1|CF308671
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33684983|gb|CF313222.1|CF313222
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|88372196|gb|CI641831.1|CI641831
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|38470484|gb|CF954615.1|CF954615
EST:     GTTGGAGATGGCCAGGACNTTATCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGAC--T-TCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|88415626|gb|CI589218.1|CI589218
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|55440920|gb|CV733773.1|CV733773
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|88330287|gb|CI658598.1|CI658598
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33662440|gb|CF293407.1|CF293407
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33817317|gb|CF334495.1|CF334495
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33658966|gb|CF281579.1|CF281579
EST:     CAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: CAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33688262|gb|CF316501.1|CF316501
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33672976|gb|CF301215.1|CF301215
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCTCTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCTGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33657649|gb|CF280263.1|CF280263
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|27576096|gb|CA998790.1|CA998790
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|88325362|gb|CI675159.1|CI675159
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|55441187|gb|CV733909.1|CV733909
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33658967|gb|CF281580.1|CF281580
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCTCTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33656988|gb|CF279602.1|CF279602
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|38479023|gb|CF963156.1|CF963156
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|55412176|gb|CV724552.1|CV724552
EST:     GTTGGAGATGGCCAGGACTTTCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|38469948|gb|CF954079.1|CF954079
EST:     GATCGGTTGGAGATGG-CAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GATCGGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33663342|gb|CF294309.1|CF294309
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|88334193|gb|CI641244.1|CI641244
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33654936|gb|CF277550.1|CF277550
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|14191784|gb|AU183995.1|AU183995
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|88977188|gb|CI024925.1|CI024925
EST:     AGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: AGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33684608|gb|CF312847.1|CF312847
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33672922|gb|CF301161.1|CF301161
EST:     AGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: AGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33682793|gb|CF311032.1|CF311032
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33655241|gb|CF277855.1|CF277855
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33656069|gb|CF278683.1|CF278683
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33661955|gb|CF292922.1|CF292922
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|88240847|gb|CI238698.1|CI238698
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|88307437|gb|CI643278.1|CI643278
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|55414951|gb|CV727327.1|CV727327
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33688906|gb|CF317145.1|CF317145
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|4969227|gb|AU066131.1|AU066131
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33658993|gb|CF281606.1|CF281606
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCTCTTTCTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGATTTATTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|88575888|gb|CI670033.1|CI670033
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|55410369|gb|CV722745.1|CV722745
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|86416168|gb|CI030179.1|CI030179
EST:     CTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: CTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33824950|gb|CF338279.1|CF338279
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33688056|gb|CF316295.1|CF316295
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33826074|gb|CF338843.1|CF338843
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33693404|gb|CF321643.1|CF321643
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33690347|gb|CF318586.1|CF318586
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33693405|gb|CF321644.1|CF321644
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33682792|gb|CF311031.1|CF311031
EST:     CAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: CAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|38468995|gb|CF953126.1|CF953126
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33655071|gb|CF277685.1|CF277685
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|88308707|gb|CI653594.1|CI653594
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33826568|gb|CF339093.1|CF339093
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|2280785|gb|C25280.1|C25280
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|55441185|gb|CV733908.1|CV733908
EST:     TTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: TTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33656599|gb|CF279213.1|CF279213
EST:     CAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: CAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33685965|gb|CF314204.1|CF314204
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|13420824|gb|AU174914.1|AU174914
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGNTCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33817320|gb|CF334496.1|CF334496
EST:     CGATCGGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: CGATCGGTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33680632|gb|CF308871.1|CF308871
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|86906123|gb|CI292654.1|CI292654
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33825635|gb|CF338630.1|CF338630
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|55434778|gb|CV730513.1|CV730513
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33691313|gb|CF319552.1|CF319552
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33692731|gb|CF320970.1|CF320970
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33656913|gb|CF279527.1|CF279527
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33684452|gb|CF312691.1|CF312691
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33691086|gb|CF319325.1|CF319325
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|4969408|gb|AU066312.1|AU066312
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGNTCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33682358|gb|CF310597.1|CF310597
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|88355164|gb|CI651867.1|CI651867
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|33670500|gb|CF298739.1|CF298739
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCTA-CTCNC-CTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|55411604|gb|CV723980.1|CV723980
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACTTTTTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|86899287|gb|CI298132.1|CI298132
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|88575414|gb|CI669559.1|CI669559
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|2311820|gb|C27975.1|C27975
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
EST: gi|88310832|gb|CI659435.1|CI659435
EST:     GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGG                         AAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA
genomic: GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 53 (downstream exon)
Score: 361

GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgct ... gatattgcagAAAGGAGGCAAGCAGAATCTGCCAGGATCCGTGAGAAGTACTCAGACAGAATTCCG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGGAGATGGCCAGGACTTCCTTCAAGCTCGAGCACCCACTGGgtttgttgcttcttctctctcgccccattacctctttgccctgtcaatttgttgcgattaggttgcaatctgtgattcgatcgatggtgtggtggtagat

 TTGGAG
- TGGAGA
-  GGAGAT
- - GAGATG
- - - - - - - - - - - - CAAGCT