Sequence
atgc intronic sequence ATGC exonic sequenceCAGGTCCCCATACTAGTTAATGATTTCATGCAGACAGAACATTCAGCAAATCAACTTTTTCCCAAGAACAATGAACCATCACCACATGTTGAACAGGAAGgtaactgtttatgtaccccatagtcccataccaagttgctataccttcaggccaactctacattggtgcattataatactttatgatttatgatacattt...
Basic information
species | Oryza sativa |
transcript | LOC_Os07g31440.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os07g31440.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G444874_T01 (Zea mays), 5'ss of exon 3
CAGGTCCCCATACTAGTTAATGATTTCATGCAGACAGAACATTCAGCAAATCAACTTTTTCCCAAGAACAATGAACCATCACCACATGTTGAACAGGAAGgtaactgtttatgtaccccatagtcccataccaagttgctataccttcaggccaactctacattggtgcattataatactttatgatttatgatacattt
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---------------------------------GCGATGTTCTCTGATGTTCAAGTTCATGCCTAGATCAGTTGCAAGGCTGAGTGGTTCAGAGATGAGAGCTGCTGGCCATG-GCGTTGATGCTCAGTTTCAGgtacccatactagttaat-gatttcatgcagacag-------------------------------
upper sequence: LOC_Os07g31440.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM5G871936_T03 (Zea mays), 5'ss of exon 1
CAGGTCCCCATACTAGTTAATGATTTCATGCAGACAGAACATTCAGCAAATCAACTTTTTCCCAAGAACAATGAACCATCACCACATGTTGAACAGGA---AGgtaactgtttatgtaccccatagtcccataccaagttgctataccttcaggccaactctacattggtgcattataatactttatgatttatgatacattt----
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CAGGTTCCCATACAAGTTAATGATTTCATGCAGACAGATCGTTTTTCTGATCAACTGTTTCCTAAGAC---TGAACCATCATTACACACAGAACAAGATTCAGgtaa--gttaatgcctctgattcgttgctat-atgcaaatatacttttaatgta-ctccctccagtcacaactaggtgatgtttgggttgtcctaagtaagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|89166276|gb|CI103366.1|CI103366EST: TCAACTTTTTCCCAAGAACAATGAACCATCACCACATGTTGAACAGGAAG CATCGTATAACTTTGTGATGAAGAGAAAG
genomic: TCAACTTTTTCCCAAGAACAATGAACCATCACCACATGTTGAACAGGAAGgtaactgttt ... tctggtgtagCATCGTATAACTTTGTGATGAAGAGAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGGTCCCCATACTAGTTAATGATTTCATGCAGACAGAACATTCAGCAAATCAACTTTTTCCCAAGAACAATGAACCATCACCACATGTTGAACAGGAAGgtaactgtttatgtaccccatagtcccataccaagttgctataccttcaggccaactctacattggtgcattataatactttatgatttatgatacattt
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