1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTTGCCGGGTAGGATTACTTTTTGGAGGATTCACTGGATCATATCATGCACTTCGATGTTTCCTTCGGAGATTTCGGAAAAAGGAAACACCATTTAATGCgtaagtaactctatgcttatgctgttttgtgtctatttatcttgtctgattcactacaacacatctgcaacgcatgtgtacctctaaccagttcttgaat...
species | Oryza sativa |
transcript | LOC_Os07g31260.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCATTTAATGC AATATTAGCAGGTTCGGTGGCAGGCTTGGCGATAGTAGCGCTAGATGATTCEST: gi|29673754|gb|CB670029.1|CB670029
genomic: CCATTTAATGCgtaagtaact ... gatggagcagAATATTAGCAGGTTCGGTGGCAGGCTTGGCGATAGTAGCGCTAGATGATTC
EST: TTCGGATGTTTCCTTCGGAGATTTCGGAAAAAGGAAACACCATTTAATGC AATATTAGCAGGTTCGGTGGCAGGCTTGGCGATAGTAGCGCTAGATGATTCEST: gi|58693867|gb|CK082554.1|CK082554
genomic: TTC-GATGTTTCCTTCGGAGATTTCGGAAAAAGGAAACACCATTTAATGCgtaagtaact ... gatggagcagAATATTAGCAGGTTCGGTGGCAGGCTTGGCGATAGTAGCGCTAGATGATTC
EST: CTTCGATGTTTCCTTCGGAGATTTCGGAAAAAGGAAACACCATTTAATGC AATATTAGCAGGTTCGGTGGCAGGCTTGGCGATAGTAGCGCTAGATGATTC
genomic: CTTCGATGTTTCCTTCGGAGATTTCGGAAAAAGGAAACACCATTTAATGCgtaagtaact ... gatggagcagAATATTAGCAGGTTCGGTGGCAGGCTTGGCGATAGTAGCGCTAGATGATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGCCGGGTAGGATTACTTTTTGGAGGATTCACTGGATCATATCATGCACTTCGATGTTTCCTTCGGAGATTTCGGAAAAAGGAAACACCATTTAATGCgtaagtaactctatgcttatgctgttttgtgtctatttatcttgtctgattcactacaacacatctgcaacgcatgtgtacctctaaccagttcttgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA