1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCCTATGGGACATTGAAGGACTACAAGAgtaagatcaccccctcccgttgcgattcgtacattacattgcccttatgtatgtgttgtcatgcgtcatatgtgtatgcttatttggtgcgtgagtctag...
species | Oryza sativa |
transcript | LOC_Os07g30840.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCTGGACGTGCTCCGCCTCTTCGCCTATGGGACATTGAAGGACTACAAGA GTAATTCTGGCAATCTCCCTGCATTGTTACCTGATCAAGTCCGGAAGCTGAEST: gi|86821685|gb|CI309190.1|CI309190
genomic: TCTGGACGTGCTCCGCCTCTTCGCCTATGGGACATTGAAGGACTACAAGAgtaagatcac ... atacatgtagGTAATTCTGGCAATCTCCCTGCATTGTTACCTGATCAAGTCCGGAAGCTGA
EST: TCTGGACGTGCTCCGCCTCTTCGCCTATGGGACATTGAAGGACTACAAGA GTAATTCTGGCAATCTCCCTGCATTGTTACCTGATCAAGTCCGGAAGCTGAEST: gi|88574651|gb|CI666420.1|CI666420
genomic: TCTGGACGTGCTCCGCCTCTTCGCCTATGGGACATTGAAGGACTACAAGAgtaagatcac ... atacatgtagGTAATTCTGGCAATCTCCCTGCATTGTTACCTGATCAAGTCCGGAAGCTGA
EST: TCTGGACGTGCTCCGCCTCTTCGCCTATGGGACATTGAAGGACTACAAGA GTAATTCTGGCAATCTCCCTGCATTGTTACCTGATCAAGTCCGGAAGCTGAEST: gi|88357936|gb|CI650672.1|CI650672
genomic: TCTGGACGTGCTCCGCCTCTTCGCCTATGGGACATTGAAGGACTACAAGAgtaagatcac ... atacatgtagGTAATTCTGGCAATCTCCCTGCATTGTTACCTGATCAAGTCCGGAAGCTGA
EST: TCTGGACGTGCTCCGCCTCTTCGCCTATGGGACATTGAAGGACTACAAGA GTAATTCTGGCAATCTCCCTGCATTGTTACCTGATCAAGTC
genomic: TCTGGACGTGCTCCGCCTCTTCGCCTATGGGACATTGAAGGACTACAAGAgtaagatcac ... atacatgtagGTAATTCTGGCAATCTCCCTGCATTGTTACCTGATCAAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCCTATGGGACATTGAAGGACTACAAGAgtaagatcaccccctcccgttgcgattcgtacattacattgcccttatgtatgtgttgtcatgcgtcatatgtgtatgcttatttggtgcgtgagtctag
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