1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTGCAGGTGTAGCTGCTGCTCCGTTCAGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGgtaactcctgctcactggtccaaatgctttcctggctgcatttctgtgttcgattcaagaatttcgcggtgtatttgtgcgaaatggatttgtgaatgggggaaaatctttctgtgcggaaccatatccag
species | Oryza sativa |
transcript | LOC_Os07g30800.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTG TGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGTEST: gi|88416923|gb|CI573638.1|CI573638
genomic: AGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGgtaactcctg ... ccatatccagTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGT
EST: AGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTG TGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGTEST: gi|88735857|gb|CI757432.1|CI757432
genomic: AGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGgtaactcctg ... ccatatccagTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGT
EST: AGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTG TGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGTEST: gi|88726209|gb|CI749864.1|CI749864
genomic: AGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGgtaactcctg ... ccatatccagTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGT
EST: AGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTG TGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGTEST: gi|88724975|gb|CI748234.1|CI748234
genomic: AGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGgtaactcctg ... ccatatccagTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGT
EST: AGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTG TGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGTEST: gi|568422|gb|D39271.1|D39271
genomic: AGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGgtaactcctg ... ccatatccagTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGT
EST: AGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTG TCCTTTGGGTTGCNATGGTGAGGGGAAGAAGAGCGTNGCGGAGGGGACGGT
genomic: AGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGgtaactcctg ... ccatatccagTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCAGGTGTAGCTGCTGCTCCGTTCAGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGgtaactcctgctcactggtccaaatgctttcctggctgcatttctgtgttcgattcaagaatttcgcggtgtatttgtgcgaaatggatttgtgaatgggggaaaatctttctgtgcggaaccatatccag
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