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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGATGAACTTGCCAAGCAAAGTGAATGGTGGAATGATTTTATGAATTATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAGgtatgacagtttctgctattttggtggctgaacttggggagtaattcttcattatctaagaacaattctactcttatttggctaaactatttcctaaatt...

Basic information

species Oryza sativa
transcript LOC_Os07g25710.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58669237|gb|CK057923.1|CK057923
EST:     ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAG                         GTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCC-
genomic: ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAGgtatgacagt ... ttcaatatagGTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAA
EST: gi|29613089|gb|CB618102.1|CB618102
EST:     ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAG                         GTTGGACCAGCTGCGCAATCATCTGTCGCAG
genomic: ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAGgtatgacagt ... ttcaatatagGTTGGACCAGCTGCGCAATCATCTGTCGCAG
EST: gi|32948128|gb|BP184700.1|BP184700
EST:     ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAG                         GTTGGACCAGCTGCGCA
genomic: ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAGgtatgacagt ... ttcaatatagGTTGGACCAGCTGCGCA
EST: gi|55411384|gb|CV723760.1|CV723760
EST:     ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAG                         GTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAA
genomic: ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAGgtatgacagt ... ttcaatatagGTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAA
EST: gi|33380900|gb|CF196243.1|CF196243
EST:     ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAG                         GTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAA
genomic: ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAGgtatgacagt ... ttcaatatagGTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAA