Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATTTGTGAAATCTGGTTTGCCATGTCTTGGATTCTTGATCAATTCCCCAAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttactgttactagctaggtatacttgttatccatcattctgaattaccaagactaattgtttgcttttatag

Basic information

species Oryza sativa
transcript LOC_Os07g24190.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g24190.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G028353_T02 (Zea mays), 5'ss of exon 6
TAATTTGTGAAATCTGGTTTGCCATGTCTTGGATTCTTGATCAATTCCCCAAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttactgttactagctaggtatacttgttatccatcattctgaattaccaagactaattgtttgcttttatag
| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| || ||  || || ||||||| ||  ||||||| | |||   ||   |    ||  |   | |   ||     || |||||| |||  |  ||||
TTATCTGTGAAATCTGGTTTGCCATGTCTTGGATTCTTGATCAATTCCCAAAGTGGTTCCCTATAGAGAGAGAGACTTACCTAGACCGGCTGTCACTGAGgttagtcgctgttaccacctacaaatctataccttctcttccttttgttt--tgtgattaattgcttgtctggatag

upper sequence: LOC_Os07g24190.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G025231_T02 (Zea mays), 5'ss of exon 6
TAATTTGTGAAATCTGGTTTGCCATGTCTTGGATTCTTGATCAATTCCCCAAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttactgttactagctaggtatacttgttatccatcattctgaattaccaagactaattgtttgcttttatag
| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| || ||  || || ||||||| ||| ||||| | | |||   ||| | |   ||  || | |||   |    |||||||||  |||  |  ||||
TTATCTGTGAAATCTGGTTTGCCATGTCTTGGATTCTTGATCAATTCCCAAAGTGGTTCCCTATTGAGAGAGAGACTTACCTAGACCGGCTGTCACTGAGgttagttgctgttgccacctactaatattagccttc--tcttcctgttgttttgagactaattacttgtatggatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88412790|gb|CI576054.1|CI576054
EST:     AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAG                         GTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAA
genomic: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAA
EST: gi|33678973|gb|CF307212.1|CF307212
EST:     AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAG                         GTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
genomic: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
EST: gi|58657578|gb|CK046258.1|CK046258
EST:     AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAG                         GTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
genomic: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
EST: gi|29624917|gb|CB629928.1|CB629928
EST:     ACCTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAG                         GTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
genomic: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
EST: gi|58693391|gb|CK082078.1|CK082078
EST:     AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAG                         GTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
genomic: AAGTGGTTTCCTATCGAGAGAGAGACTTACCTTGATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
EST: gi|29635077|gb|CB640086.1|CB640086
EST:     GATCGATTGACATTGAG                         GTGTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
genomic: GATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
EST: gi|29632077|gb|CB637086.1|CB637086
EST:     GATCGATTGACATTGAG                         GTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT
genomic: GATCGATTGACATTGAGgttggttact ... gcttttatagGTTTGACAAGGAAGGCCAAACATCTCAACTTGCACCAATCGATTTCTTTGT