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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctattcacagaggttatatgggtgccaagctcacaaacaacatagaatgtgaaattttccag

Basic information

species Oryza sativa
transcript LOC_Os07g22950.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g22950.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G032699_T02 (Zea mays), 5'ss of exon 2
TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctattcacagaggttatatgggtgccaagctcacaaacaacatagaatgtgaaattttccag
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||| ||||  | |||||  | || || |  || |     ||  |  ||      ||| ||        ||| |  || | | |  |   |  | |   | ||                                                  
TAGATTACCACGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTCGTAGTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatcca-agttgaatt-cgacgtaagtgc-attctagtcacctcatcctgcatccttat-atttgggactaaacttgtacag--------------------------------------------------

upper sequence: LOC_Os07g22950.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G032699_T01 (Zea mays), 5'ss of exon 2
----TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctattcacagaggttatatgggtgccaagctcacaaacaacatagaatgtgaaattttccag
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||| ||||  | |||||  | || || |  || |     ||  |  ||      ||| ||        ||| |  || | | |  |   |  | |   | ||                                                  
CTAGTAGATTACCACGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTCGTAGTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGgtaggtaggtaatcca-agttgaatt-cgacgtaagtgc-attctagtcacctcatcctgcatccttat-atttgggactaaacttgtacag--------------------------------------------------

upper sequence: LOC_Os07g22950.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA16G27430.1 (Glycine max), 5'ss of exon 3
TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctattcacagaggttatatgggtgccaagctcacaaacaacatagaatgtgaaattttccag
| || |||||||| |||||||||||||| || |||||||||||    || ||||| || ||||| |||||| | ||| || |||| || |||| ||| |||||    |  |           ||    ||   |||   |||  |  |||    |  |  ||||  | ||  | || |   |  | | || | |                                            
TGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaagactcgttcctgttattgttcattagttttgata--ctctat----tattggtttc--attataaattttccccgtatatgtgacag-------------------------------------------

upper sequence: LOC_Os07g22950.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA02G08350.1 (Glycine max), 5'ss of exon 3
TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctattcacagaggttatatgggtgccaagctcacaaacaacatagaatgtgaaattttccag
| || |||||||| |||||||||||||| || |||||||||||    || ||||| || ||||| |||||| |  || || |||| || |||| | | |||||   || | |||   |              | |||   | || | | |  | |  | |||||  | ||  |  | |      | | || | |                                            
TGGACTACCATGGCTGTGATTTCTTTCCCGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgta---ca-gaagactcgtttctgttattgattattgattttgctactct--attattgatttc--attataaactttccctgtatatgtgacag-------------------------------------------