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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctattcacag

Basic information

species Oryza sativa
transcript LOC_Os07g22950.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g22950.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G032699_T02 (Zea mays), 5'ss of exon 2
TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctatt-cacag
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||| ||||  | |||||  | || || |  || |     ||  |  ||      ||| ||        ||| |  || |   |  || |    ||  ||||
TAGATTACCACGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTCGTAGTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGGTAGgtaggtaatcca-agttgaatt-cgacgtaagtgc-attctagtcacctcatcctgcatccttatatttgggactaaacttgtacag

upper sequence: LOC_Os07g22950.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G032699_T01 (Zea mays), 5'ss of exon 2
----TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctatt-cacag
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||| ||||  | |||||  | || || |  || |     ||  |  ||      ||| ||        ||| |  || |   |  || |    ||  ||||
CTAGTAGATTACCACGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTCGTAGTTGTGCTCCAGACTGACAACTCAATTCTGCATGATCGCCTGACGGgtaggtaggtaatcca-agttgaatt-cgacgtaagtgc-attctagtcacctcatcctgcatccttatatttgggactaaacttgtacag

upper sequence: LOC_Os07g22950.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA16G27430.1 (Glycine max), 5'ss of exon 3
TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctattcacag---
| || |||||||| |||||||||||||| || |||||||||||    || ||||| || ||||| |||||| | ||| || |||| || |||| ||| |||||    |  |           ||    ||   |||   |||  |  ||| |   | ||  || | | |        |||         
TGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaagactcgttcctgttattgttcattagttttgata--ctctattattggtttcattataaattttccccgtatatgtgacag

upper sequence: LOC_Os07g22950.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA02G08350.1 (Glycine max), 5'ss of exon 3
TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctattcacag-------
| || |||||||| |||||||||||||| || |||||||||||    || ||||| || ||||| |||||| |  || || |||| || |||| | | |||||   || | |||   |              | |||   | || | | |  | |  | |||||    |||   |||  |  | |        
TGGACTACCATGGCTGTGATTTCTTTCCCGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgta---ca-gaagactcgtttctgttattgattattgattttgctactct--attattgatttcattataaactttccctgtatatgtgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87005263|gb|CI283486.1|CI283486
EST:     ACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAG                         AGGTTATATGGGTGCCAAGCTCACAAACAACATAGAATGTGAAATTTTCCA
genomic: ACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatg ... ctattcacagAGGTTATATGGGTGCCAAGCTCACAAACAACATAGAATGTGAAATTTTCCA
EST: gi|88995744|gb|CI037114.1|CI037114
EST:     GTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAG                         AGGTTATATGGGTGCCAAGCTCACAAACAACATAGAATGTGAAATTTTCCA
genomic: GTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatg ... ctattcacagAGGTTATATGGGTGCCAAGCTCACAAACAACATAGAATGTGAAATTTTCCA
EST: gi|88402151|gb|CI614994.1|CI614994
EST:     TGTGCTCCAAACAGATAACGTCAATTCTGCCATGATCGCTTGACTAGCAG                         AGGTTATATGGGTGCCAAGCTCACAAACAACATAGAATGTGAAATTTTC-A
genomic: TGTGCTCCAAACAGATAAC-TCAATTCTGC-ATGATCGCTTGACTAGCAGgtaattcatg ... ctattcacagAGGTTATATGGGTGCCAAGCTCACAAACAACATAGAATGTGAAATTTTCCA
EST: gi|88244876|gb|CI242727.1|CI242727
EST:     GTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAG                         AGGTTATATGGGTGCCAAGCTCACAAACAACATAGAATGTGAAATTTTCCA
genomic: GTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatg ... ctattcacagAGGTTATATGGGTGCCAAGCTCACAAACAACATAGAATGTGAAATTTTCCA
EST: gi|88369768|gb|CI680440.1|CI680440
EST:     GTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAG                         AGGTTATATGGGTGCCAAGCTCACAAACAACATAGAATGTGAAATTTTCCA
genomic: GTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatg ... ctattcacagAGGTTATATGGGTGCCAAGCTCACAAACAACATAGAATGTGAAATTTTCCA