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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgctacccatcttttatcattttattttgattgtgtgtatttgtcaactaattgaccacggtacgcaagcaacctgtttgtccaactcaactgga...

Basic information

species Oryza sativa
transcript LOC_Os07g22720.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88300347|gb|CI584766.1|CI584766
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88386942|gb|CI629269.1|CI629269
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88386965|gb|CI629292.1|CI629292
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88316027|gb|CI618903.1|CI618903
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGC-AGATTTCCTCAGGGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88719018|gb|CI742528.1|CI742528
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88345753|gb|CI631021.1|CI631021
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|86909491|gb|CI304683.1|CI304683
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCA
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCA
EST: gi|117233831|gb|CT842341.1|CT842341
EST:     CGTGCGCTACTTCTCCACTGCTCCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88351581|gb|CI628801.1|CI628801
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88337819|gb|CI632321.1|CI632321
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88301479|gb|CI597172.1|CI597172
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88397241|gb|CI580751.1|CI580751
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88329570|gb|CI650024.1|CI650024
EST:     CGTGCGCTACTTCTCCACTGGTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88337429|gb|CI630726.1|CI630726
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCA
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCA
EST: gi|88719499|gb|CI743009.1|CI743009
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCA
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCA
EST: gi|88728091|gb|CI751601.1|CI751601
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCACATTTCCTCACCGCAAGGCAAC-T
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAG-CAACCT
EST: gi|88345084|gb|CI628338.1|CI628338
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88337595|gb|CI630892.1|CI630892
EST:     GTGCGCTACTTCTCCACTGGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCACATTTCCTCAGCGCAAGCAACCTG
genomic: GTGCGCTACTTCTCCACTG-CTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88722411|gb|CI745921.1|CI745921
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACC
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACC
EST: gi|88394949|gb|CI607676.1|CI607676
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCAACAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88337269|gb|CI629559.1|CI629559
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88385233|gb|CI630334.1|CI630334
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88345200|gb|CI628454.1|CI628454
EST:     CGTGCGCTANTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88386959|gb|CI629286.1|CI629286
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|88371619|gb|CI602797.1|CI602797
EST:     CGTGCGCTACTTCTCCACTGGTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
EST: gi|29636053|gb|CB641062.1|CB641062
EST:     CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG                         GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG
genomic: CGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATGgtatgtgcta ... gtttccacagGTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTG