Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATATTCTGCCGGAACCCGTACAACGCCACCGGAATATGCAACCGGAGCTCCTGCCCTCTTGCCAACAGCCGCTACGCCACCATCCGCGACCATGACGgtgaatatatacagagagaatcccttatatgctactgaaaattagtctgatcccttatatgccattgaaaattggctctttccttatatgccattgatcc...

Basic information

species Oryza sativa
transcript LOC_Os07g17040.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g17040.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G461793_T01 (Zea mays), 5'ss of exon 2
GGGATATTCTGCCGGAACCCGTACAACGCCACCGGAATATGCAACCGGAGCTCCTGCCCTCTTGCCAACAGCCGCTACGCCACCATCCGCGACCATGACGgtgaatatatacagagagaatcccttatatgcta-ctgaaaattagtctgatcccttatatgccattgaaa--att---ggctctttccttatatgccat-tgatcc
||||| ||||| || ||||| |||||||| || || || |||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||| |||||  |    |      ||||| || | || ||  |||  | || |  |    | |  ||| || ||  |  |||   |||   | |   | |||     |  |||
GGGATCTTCTGTCGCAACCCCTACAACGCGACGGGCATCTGCAACCGGAGCTCCTGCCCGCTTGCCAACAGCCGCTATGCCACCATCCGGGATCATGAAGgtgatcaccagc------aatcctttttgtgttaattgattaataatg-gtgtacatggatggcagtgccaccattttaggcagctgcaaaacatgtttcctagtcc

upper sequence: LOC_Os07g17040.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AT1G23280.1 (Arabidopsis thaliana), 5'ss of exon 2
GGGATATTCTGCCGGAACCCGTACAACGCCACCGGAATATGCAACCGGAGCTCCTGCCCTCTTGCCAACAGCCGCTACGCCACCATCCGCGACCATGACGgtgaatatatacagagag--aatcccttatatgctactgaaaattagtctgatcccttatatgccattgaaaattggctctttccttatatgccattgatcc------------------------------------------------------------------------------
|| || || ||| | ||||  || || |  || ||||| || || || ||||| ||||||||||| || ||||| |||||||| ||||| |||||||| ||| | | |    | || |  ||||  | |  || | |||    || |  |  |     ||  |   ||||   || | |       || | | || | |                                                                                 
GGAATCTTTTGCAGAAACCAATATAATGTAACAGGAATCTGTAATCGAAGCTCTTGCCCTCTTGCTAATAGCCGATACGCCACTATCCGTGACCATGATGgtaatttttagaaaagtgtcaatctttgagctgattctgtgtgttggaatagttagg-attgggtgttgat--ttagtttacgtagtaaagggcaattagaaagatgtttcttttgagtttagtgttgttgtggtggtttcttacaaatggattttcttgtgttgttgttgtttatacag