1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAGgttcgttccaggatttgtttccttcttgtgtctgaatttgctgattttagttttcggttactgtttacctgttagatgaaaggtgttacacgcctctagt...
species | Oryza sativa |
transcript | LOC_Os07g14580.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAG GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGEST: gi|117230076|gb|CT853782.1|CT853782
genomic: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAGgttcgttcca ... tgcaatgcagGAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAG
EST: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAG GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGEST: gi|88724679|gb|CI747938.1|CI747938
genomic: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAGgttcgttcca ... tgcaatgcagGAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAG
EST: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAG GAATGCGCAGCCCAGATTCCAEST: gi|33657056|gb|CF279670.1|CF279670
genomic: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAGgttcgttcca ... tgcaatgcagGAATGCGCAGCCCAGATTCCA
EST: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAG GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGEST: gi|88358340|gb|CI606849.1|CI606849
genomic: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAGgttcgttcca ... tgcaatgcagGAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAG
EST: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAG GAATGCGCAGCCCAGGTTCCAGTTTGTTGTCATGAATCGTCGTAATACAGEST: gi|58597046|gb|CK007574.1|CK007574
genomic: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAGgttcgttcca ... tgcaatgcagGAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAG
EST: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAG GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGEST: gi|86596782|gb|CI286695.1|CI286695
genomic: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAGgttcgttcca ... tgcaatgcagGAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAG
EST: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAG GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTEST: gi|58690454|gb|CK079141.1|CK079141
genomic: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAGgttcgttcca ... tgcaatgcagGAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGT
EST: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAG GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAG
genomic: AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAGgttcgttcca ... tgcaatgcagGAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAGgttcgttccaggatttgtttccttcttgtgtctgaatttgctgattttagttttcggttactgtttacctgttagatgaaaggtgttacacgcctctagt
- - - AGGATG
- - - - - - GTGGAG
- - - - - - TGGAGG