1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAAAGTCGGTGGGTCAAGTCAGAATGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAGgtaaattggaagatcaatacacctcattcagacactaacagatgatttttactgaattatttttcttgttgcag
species | Oryza sativa |
transcript | LOC_Os07g14270.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGAG-TCCTGAGGACAAAG GTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACCEST: gi|29675378|gb|CB671653.1|CB671653
genomic: TGGAGATCCTGAGGACAAAGgtaaattgga ... cttgttgcagGTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACC
EST: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAG GTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACCEST: gi|6012783|gb|AU078600.1|AU078600
genomic: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAGgtaaattgga ... cttgttgcagGTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACC
EST: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTNAGGACAAAG GTATCCAAACCTCTNAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACCEST: gi|29675242|gb|CB671517.1|CB671517
genomic: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAGgtaaattgga ... cttgttgcagGTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACC
EST: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAG GTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACCEST: gi|88688874|gb|CI732450.1|CI732450
genomic: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAGgtaaattgga ... cttgttgcagGTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACC
EST: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAG GTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACCEST: gi|88312709|gb|CI587617.1|CI587617
genomic: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAGgtaaattgga ... cttgttgcagGTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACC
EST: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAG GTATCCAAACCTCTGATGACTACAGGTTCTACGCTATTTCAGCGGAGTACCEST: gi|88311943|gb|CI577549.1|CI577549
genomic: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAGgtaaattgga ... cttgttgcagGTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACC
EST: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAG GTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACCEST: gi|88689333|gb|CI732909.1|CI732909
genomic: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAGgtaaattgga ... cttgttgcagGTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACC
EST: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAG GTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACCEST: gi|58604287|gb|CK014815.1|CK014815
genomic: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAGgtaaattgga ... cttgttgcagGTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACC
EST: TGAATGGAAGGGCACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAG GTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACCEST: gi|88688533|gb|CI732109.1|CI732109
genomic: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAGgtaaattgga ... cttgttgcagGTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACC
EST: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAG GTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACCEST: gi|88348476|gb|CI629965.1|CI629965
genomic: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAGgtaaattgga ... cttgttgcagGTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACC
EST: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAG GTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACC
genomic: TGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAGgtaaattgga ... cttgttgcagGTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGTCGGTGGGTCAAGTCAGAATGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAGgtaaattggaagatcaatacacctcattcagacactaacagatgatttttactgaattatttttcttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC