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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTGCGGGAAGCAGGTGTACCTGGgtgagctcctatttctagtctcccaagctaaattcgctcgcatgactgctaaatttgggtctctacttagcttgattccgatttgtttgctcctgccttgttttttttttctgttttcag

Basic information

species Oryza sativa
transcript LOC_Os07g13170.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g13170.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G176175_T01 (Zea mays), 5'ss of exon 2
GGACTGCGGGAAGCAGGTGTACCTGGgtgagctcctatttctagtctcccaagctaaattcgctcgcatgactgctaaatttgggtctctacttagcttgattccgatttgtttgctcctgccttgttttttttttctgttttcag
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GGACTGCGGGAAGCAGGTCTACCTGGgtgagctca-aattctagtctccc----------tgctcaagctaccgctaacttttagtctc--ctggccttgattctgttgtgctgg-tgttg--ttgttttttttttcttctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58673756|gb|CK062442.1|CK062442
EST:     GGACTGCGGGAAGCAGGTGTACCTGG                         GTGGTTTCGATACAGCTCATGCCGCAGCGAG
genomic: GGACTGCGGGAAGCAGGTGTACCTGGgtgagctcct ... ctgttttcagGTGGTTTCGATACAGCTCATGCCGCAGCGAG
EST: gi|29677591|gb|CB673866.1|CB673866
EST:     GGACTGCGGGAAGCAGGTGTACCTGG                         GTGGTTTCGATACAGCTCATGCCGCAGCGAG
genomic: GGACTGCGGGAAGCAGGTGTACCTGGgtgagctcct ... ctgttttcagGTGGTTTCGATACAGCTCATGCCGCAGCGAG