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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGGAGGATCAGGGCCAGCCGGGAGAAGGGGCGGCGGGTCGGGATTAGGGTTTTCGCGAGGTACAGCCAGGCCCAGGACTTCTCCACTCGCCTCCAAGgtaatcgattggttgatttctttccccatctctgtataattcgatttggtacttggttcaaagccactgtttaggcccagcttagttgaacatttgaaca...

Basic information

species Oryza sativa
transcript LOC_Os07g12530.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29615296|gb|CB620308.1|CB620308
EST:     GGTTTTCGCGAGGTACAGCCAGGCCCAGGACTTCTCCACTCGCCTCCAAG                         ATAGAGCTGGCGAATTGCCTAAGTTGGTTGAGGACCTTCTACAGACATCAA
genomic: GGTTTTCGCGAGGTACAGCCAGGCCCAGGACTTCTCCACTCGCCTCCAAGgtaatcgatt ... tcaaatgcagATAGAGCTGGCGAATTGCCTAAGTTGGTTGAGGACCTTCTACAGACATCAA
EST: gi|29615293|gb|CB620305.1|CB620305
EST:     GGTTTTCGCGAGGTACAGCCAGGCCCAGGACTTCTCCACTCGCCTCCAAG                         ATAGAGCTGGCGAATTGCCTAAGTTGGTTGAGGACCTTCTACAGACATCAA
genomic: GGTTTTCGCGAGGTACAGCCAGGCCCAGGACTTCTCCACTCGCCTCCAAGgtaatcgatt ... tcaaatgcagATAGAGCTGGCGAATTGCCTAAGTTGGTTGAGGACCTTCTACAGACATCAA
EST: gi|29615266|gb|CB620278.1|CB620278
EST:     GCTTTTAGCGAGGTACAGCCAGGCCCAGGACTTCTCCACTCGCCTCCAAG                         ATAGAGCTGGCGAATTGCCTAAGCTGGTTGAGGACCTTCTACAGACATCAA
genomic: GGTTTTCGCGAGGTACAGCCAGGCCCAGGACTTCTCCACTCGCCTCCAAGgtaatcgatt ... tcaaatgcagATAGAGCTGGCGAATTGCCTAAGTTGGTTGAGGACCTTCTACAGACATCAA
EST: gi|29619070|gb|CB624082.1|CB624082
EST:     GGTTTTCGCGTGGTACAGCCAGGCCCAGGACTTCTCCACTCGCCTCCAAG                         ATAGAGCTGGCGAATTGCCTAAGTTGGTTGAGGACCTTCTACAGACATCAA
genomic: GGTTTTCGCGAGGTACAGCCAGGCCCAGGACTTCTCCACTCGCCTCCAAGgtaatcgatt ... tcaaatgcagATAGAGCTGGCGAATTGCCTAAGTTGGTTGAGGACCTTCTACAGACATCAA
EST: gi|29615258|gb|CB620270.1|CB620270
EST:     CCTTTTCGCGAGGTACAGCCAGGACCAGGACTTCTCCACTCGCCTCCAAG                         ATAGAGCTGGCGAATTGCCTAAGTTGGTTGAGGACCTTCTACAGACATCAA
genomic: GGTTTTCGCGAGGTACAGCCAGGCCCAGGACTTCTCCACTCGCCTCCAAGgtaatcgatt ... tcaaatgcagATAGAGCTGGCGAATTGCCTAAGTTGGTTGAGGACCTTCTACAGACATCAA
EST: gi|29615291|gb|CB620303.1|CB620303
EST:     GGACTTCTCCACTCGCCTCCAAG                         ATAGAGCTGGCGAATTGCCTAAGTTGCTTGAGGACCTTCTACAGACATCAA
genomic: GGACTTCTCCACTCGCCTCCAAGgtaatcgatt ... tcaaatgcagATAGAGCTGGCGAATTGCCTAAGTTGGTTGAGGACCTTCTACAGACATCAA
EST: gi|29615505|gb|CB620517.1|CB620517
EST:     CAGGACTTCTCCACTCGCCTCCAAG                         ATAGAGCTGGCGAATTGCCTAAGTTCCCTGAGGACCTTCTACAGACATCAA
genomic: CAGGACTTCTCCACTCGCCTCCAAGgtaatcgatt ... tcaaatgcagATAGAGCTGGCGAATTGCCTAAGTTGGTTGAGGACCTTCTACAGACATCAA
EST: gi|29615222|gb|CB620235.1|CB620235
EST:     GGTACAGCCAGGCCCAGGACTTCTCCACTCGCCTCCAAG                         ATAGAGCTGGCGAATTGCCTAAGTTGGTTGAGGACCTTCTACAGACATCAA
genomic: GGTACAGCCAGGCCCAGGACTTCTCCACTCGCCTCCAAGgtaatcgatt ... tcaaatgcagATAGAGCTGGCGAATTGCCTAAGTTGGTTGAGGACCTTCTACAGACATCAA
EST: gi|29615327|gb|CB620339.1|CB620339
EST:     GCTTTTAGCGAGGTACAGCCAGGCCCAGGACTTCTCCACTCGCCTCCAAG                         ATAGAGCTGGCGAATTGCCTAAGTCTGCGTTGAGGACCTTCTACAGACATC
genomic: GGTTTTCGCGAGGTACAGCCAGGCCCAGGACTTCTCCACTCGCCTCCAAGgtaatcgatt ... tcaaatgcagATAGAGCTGGCGAATTGCCTAAGT-TG-GTTGAGGACCTTCTACAGACATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGAGGAGGATCAGGGCCAGCCGGGAGAAGGGGCGGCGGGTCGGGATTAGGGTTTTCGCGAGGTACAGCCAGGCCCAGGACTTCTCCACTCGCCTCCAAGgtaatcgattggttgatttctttccccatctctgtataattcgatttggtacttggttcaaagccactgtttaggcccagcttagttgaacatttgaaca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccatc