Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACCATGTACAATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttctctcagcgtgtactgttactgatctgtagacatgaagctgtgattgattgtttatacacaatgatgtcaggactcatgccacaacccatactgttacatttctgactgcag

Basic information

species Oryza sativa
transcript LOC_Os07g10720.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g10720.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S426_18V6.1 (Physcomitrella patens), 5'ss of exon 1
AAAACCATGTACAATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttctctcagcgtgtactgttactgatctgtagacatgaagctgtgattgattgtttatacacaatgatgtcaggactcatgccacaacccatactgttacatttctgactgcag
|| | ||||| ||| || |||||||| || ||||||||||| || ||||| ||||| || |||||  |||||||||||||   ||| ||||||||||| |||||||  |             |  |||||  |  | || | ||    |||  | | |   |          |||| |||  |||     |  ||   |  ||   |||| |         
AAGAACATGTTCAACGCGGAGAAGCGCGGCAAGCGCCAAGTGCTCATCCGCCCCTCCTCCAAGGTCGTCATCAAGTTCCTGTCCGTGATGCAGAAGCACGgtatgtggttataatctaaacccccttactcgt--gcaggcgtgcc-ttgtactgggtcagtg---------gatgacagtgctcggagtattacgagtgttgg-gcattacg--------

upper sequence: LOC_Os07g10720.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ14550 (Selaginella moellendorffii), 5'ss of exon 1
AAAACCATGTACAATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttctctcagcgtgtactgttactgatctgtagacatgaagctgtgattgattgtttatacacaatgatgtcaggactcatgccacaacccatactgttacatttctgactgcag
|| |||||||||||||| ||||||||||| |||||||| ||  | ||||| |||||||| || ||||||||||| ||||||   || ||||| ||||| |||| |     |||  |||  | |  ||   | | | |   |||      | |  | |                                                                
AAGACCATGTACAATGCGGAGAAGCGTGGCAAGCGCCAGGTCTTGATCCGCCCCTCGTCGAAAGTGATCATCAAATTCCTCGCTGTGATGCAAAAGCACGgtaaga----tcttcgcgaattcctttttggttgtttcttcatcctctcgcgcatcag---------------------------------------------------------------

upper sequence: LOC_Os07g10720.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ26253 (Selaginella moellendorffii), 5'ss of exon 1
AAAACCATGTACAATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatg-tcttctctcagcgtgtactgttactgatctgtagacatgaagctgtgattgattgtttatacacaatgatgtcaggactcatgccacaacccatactgttacatttctgactgcag
|| |||||||||||||| ||||||||||| |||||||| ||  | ||||| |||||||| || ||||||||||| ||||||  ||| ||||| ||||| |||| | ||||| |  |     |   ||   |  |   |     ||    |  |                                                                     
AAGACCATGTACAATGCGGAGAAGCGTGGCAAGCGCCAGGTCTTGATCCGCCCCTCGTCGAAAGTGATCATCAAATTCCTCGCCGTGATGCAAAAGCACGgtaagatcttcgcgaattccttttggtcgtttcttcatccttttgcgcatcag---------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58588785|gb|CF987093.1|CF987093
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATTGTCATGCAGAAGCGTG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|89176324|gb|CI043345.1|CI043345
EST:     CTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: CTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88741795|gb|CI765303.1|CI765303
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88210127|gb|CI209976.1|CI209976
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|27578056|gb|CB000751.1|CB000751
EST:     CAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: CAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86422625|gb|CI060198.1|CI060198
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTGATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88506836|gb|CI434342.1|CI434342
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTTGTTGATGACCACCGGTCTGGCAAGATC
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAG-TTTGTTGATGACCACCGGTCTGGCAAGATC
EST: gi|86525457|gb|CI165663.1|CI165663
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88982806|gb|CI028219.1|CI028219
EST:     GTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88244443|gb|CI243565.1|CI243565
EST:     ATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: ATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86821490|gb|CI266866.1|CI266866
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86531424|gb|CI171630.1|CI171630
EST:     CGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: CGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|87020559|gb|CI263422.1|CI263422
EST:     TTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: TTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|15852019|gb|BI800295.1|BI800295
EST:     CAAAGGTGATCATCAGAGTTCCTCATTGTCATCGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: CAAAGGTGATCATCA-AGTTCCTCATCGTCAT-GCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88210120|gb|CI209969.1|CI209969
EST:     GTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86419643|gb|CI054444.1|CI054444
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTGATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86531815|gb|CI172021.1|CI172021
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|38473273|gb|CF957405.1|CF957405
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTTATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88241898|gb|CI241747.1|CI241747
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86512909|gb|CI155542.1|CI155542
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86256896|gb|CI061659.1|CI061659
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86859335|gb|CI278780.1|CI278780
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|30226541|gb|CB964433.1|CB964433
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88242573|gb|CI242422.1|CI242422
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86533539|gb|CI173745.1|CI173745
EST:     TTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: TTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86531816|gb|CI172022.1|CI172022
EST:     TTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: TTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86522490|gb|CI162696.1|CI162696
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88212232|gb|CI211872.1|CI211872
EST:     AGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: AGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86532005|gb|CI172211.1|CI172211
EST:     TCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: TCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88210345|gb|CI210194.1|CI210194
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86528987|gb|CI169193.1|CI169193
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|58668414|gb|CK057100.1|CK057100
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|15848634|gb|BI796910.1|BI796910
EST:     CCCTCAGTCAAAGGTGATCATCAAGTTCCTCATTGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: CCCTC-GTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88212042|gb|CI211682.1|CI211682
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88236979|gb|CI236828.1|CI236828
EST:     AGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: AGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|87022509|gb|CI267646.1|CI267646
EST:     GTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|89167277|gb|CI252808.1|CI252808
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|30227776|gb|CB965668.1|CB965668
EST:     CCCTCGTCAAAGGTGATCATTCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: CCCTCGTCAAAGGTGATCA-TCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88204167|gb|CI204016.1|CI204016
EST:     GATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86423014|gb|CI060587.1|CI060587
EST:     TCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: TCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88208977|gb|CI208826.1|CI208826
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86258312|gb|CI064665.1|CI064665
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|23514163|gb|BU673493.1|BU673493
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|86534694|gb|CI174900.1|CI174900
EST:     TCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: TCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88240175|gb|CI239337.1|CI239337
EST:     GTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88207248|gb|CI207097.1|CI207097
EST:     GTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
EST: gi|88209802|gb|CI209651.1|CI209651
EST:     GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG
genomic: GCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 66 (upstream exon), 75 (downstream exon)
Score: 148

AAAACCATGTACAATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttc ... ctgactgcagGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTCTGGCAAGATCGTGGTTGAGCTGAATGGACGCCTTAACAAGTGTGGTGTCATCAGCCCACG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAACCATGTACAATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTCGTCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGgtatgtcttctctcagcgtgtactgttactgatctgtagacatgaagctgtgattgattgtttatacacaatgatgtcaggactcatgccacaacccatactgttacatttctgactgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC