1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGAGGGCGGAGCTCGGGGAGGAGCCGGGCGACGCGCCGCGTGGCATCACGGTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcctccactgcttctcttctcgttgactgttctatcatttgcgggaatttctcaggcggggaggggaggggtgatatgattagttaggagttcg...
species | Oryza sativa |
transcript | LOC_Os07g09000.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAATGGGTGCAT GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|58606203|gb|CK034236.1|CK034236
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GTTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|88413396|gb|CI581411.1|CI581411
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|58674632|gb|CK063319.1|CK063319
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCGCTGTTCGACTTATTTCAAGAGAEST: gi|58666909|gb|CK055595.1|CK055595
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|58592567|gb|CF990875.1|CF990875
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GTTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|117233168|gb|CT848021.1|CT848021
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GTTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|86904427|gb|CI308637.1|CI308637
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGEST: gi|87005363|gb|CI285585.1|CI285585
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAG
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|30228290|gb|CB966181.1|CB966181
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|58683603|gb|CK072290.1|CK072290
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|58600783|gb|CK011311.1|CK011311
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGEST: gi|58605016|gb|CK033049.1|CK033049
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTG
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GTTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|29640028|gb|CB645037.1|CB645037
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|88363482|gb|CI618043.1|CI618043
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|58684449|gb|CK073136.1|CK073136
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|58668962|gb|CK057648.1|CK057648
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|29636208|gb|CB641217.1|CB641217
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|29627838|gb|CB632849.1|CB632849
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GTTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|87005434|gb|CI285656.1|CI285656
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGAGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|88425533|gb|CI567253.1|CI567253
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGTGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTGACTGTTCGACTTATTTCAAGAGAEST: gi|58695857|gb|CK084544.1|CK084544
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|58666737|gb|CK055423.1|CK055423
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|33796125|gb|CF323928.1|CF323928
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|88424456|gb|CI608042.1|CI608042
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGAEST: gi|29674145|gb|CB670420.1|CB670420
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
EST: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAG GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
genomic: GTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcct ... tgaactgaagGCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGGCGGAGCTCGGGGAGGAGCCGGGCGACGCGCCGCGTGGCATCACGGTGCACCCCAGCGGCGACGAGCTCGTCTGCGCCACGGCCAAGGGGTGCAGgtgcgtgcctccactgcttctcttctcgttgactgttctatcatttgcgggaatttctcaggcggggaggggaggggtgatatgattagttaggagttcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagggg